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[ Arabidopsis thaliana (thale cress) ]

Gene ID: 835994, updated on 22-Aug-2024

Summary

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Primary source
Araport:AT5G58784
Locus tag
AT5G58784
See related
TAIR:AT5G58784
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Genomic context

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Location:
chromosome: 5
Exon count:
4
Sequence:
Chromosome: 5; NC_003076.8 (23739818..23741388, complement)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene Undecaprenyl pyrophosphate synthetase family protein Neighboring gene Undecaprenyl pyrophosphate synthetase family protein Neighboring gene Undecaprenyl pyrophosphate synthetase family protein Neighboring gene RING/U-box superfamily protein Neighboring gene uncharacterized protein Neighboring gene Quinone reductase family protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Characterization of dehydrodolichyl diphosphate synthase of Arabidopsis thaliana, a key enzyme in dolichol biosynthesis. Cunillera N, et al. FEBS Lett, 2000 Jul 21. PMID 10908715
  2. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

GeneRIFs: Gene References Into Functions

Pathways from PubChem

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General gene information

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Homology

NM_125267.5

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables dehydrodolichyl diphosphate synthase activity IGI
Inferred from Genetic Interaction
more info
 PubMed 
enables transferase activity, transferring alkyl or aryl (other than methyl) groups IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within dolichol biosynthetic process IGI
Inferred from Genetic Interaction
more info
 PubMed 
involved_in protein glycosylation IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in chloroplast ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
Undecaprenyl pyrophosphate synthetase family protein
NP_568884.4
  • Undecaprenyl pyrophosphate synthetase family protein; FUNCTIONS IN: dehydrodolichyl diphosphate synthase activity; INVOLVED IN: dolichol biosynthetic process; LOCATED IN: endomembrane system; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Di-trans-poly-cis-decaprenylcistransferase-like, conserved site (InterPro:IPR018520), Di-trans-poly-cis-decaprenylcistransferase-like (InterPro:IPR001441); BEST Arabidopsis thaliana protein match is: Undecaprenyl pyrophosphate synthetase family protein (TAIR:AT5G58780.1); Has 9203 Blast hits to 9140 proteins in 2783 species: Archae - 287; Bacteria - 5302; Metazoa - 199; Fungi - 258; Plants - 222; Viruses - 0; Other Eukaryotes - 2935 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    23739818..23741388 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_125267.5 → NP_568884.4  Undecaprenyl pyrophosphate synthetase family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_568884.4

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q570Q8, Q9LUY1
    UniProtKB/TrEMBL
    A0A178UCM0, A0A5S9YF88, A0A654GCF3
    Conserved Domains (1) summary
    cd00475
    Location:73 → 291
    Cis_IPPS; Cis (Z)-Isoprenyl Diphosphate Synthases
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q570Q8.2

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