U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

SWAP (Suppressor-of-White-APricot)/surp domain-containing protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 835601, updated on 18-Sep-2024

Summary

Go to the top of the page Help
Official Full Name
SWAP (Suppressor-of-White-APricot)/surp domain-containing protein
Primary source
TAIR:AT5G55100
Locus tag
AT5G55100
See related
Araport:AT5G55100
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
MCO15.5; MCO15_5
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
Location:
chromosome: 5
Exon count:
4
Sequence:
Chromosome: 5; NC_003076.8 (22361035..22364824, complement)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene ras-related nuclear protein 4 Neighboring gene mitogen-activated protein kinase kinase kinase 15 Neighboring gene Stigma-specific Stig1 family protein Neighboring gene GDP-L-galactose phosphorylase VITAMIN C DEFECTIVE 5 (VTC5)

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Arabidopsis MAS2, an Essential Gene That Encodes a Homolog of Animal NF-κ B Activating Protein, Is Involved in 45S Ribosomal DNA Silencing. Sánchez-García AB, et al. Plant Cell, 2015 Jul. PMID 26139346, Free PMC Article
  2. Proteome-wide screens for small ubiquitin-like modifier (SUMO) substrates identify Arabidopsis proteins implicated in diverse biological processes. Elrouby N, et al. Proc Natl Acad Sci U S A, 2010 Oct 5. PMID 20855607, Free PMC Article
  3. Evidence for network evolution in an Arabidopsis interactome map. Arabidopsis Interactome Mapping Consortium. Science, 2011 Jul 29. PMID 21798944, Free PMC Article
  4. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

GeneRIFs: Gene References Into Functions

Interactions

Go to the top of the page Help
Products Interactant Other Gene Complex Source Pubs Description

General gene information

Go to the top of the page Help
NM_001345107.1
NM_001345108.1
NM_001345109.1
NM_001345116.1
NM_124892.4
NM_180863.2

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in RNA processing IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

Go to the top of the page Help
Preferred Names
SWAP (Suppressor-of-White-APricot)/surp domain-containing protein
NP_568820.1
  • SWAP (Suppressor-of-White-APricot)/surp domain-containing protein; FUNCTIONS IN: RNA binding; INVOLVED IN: RNA processing; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Splicing factor, suppressor of white apricot (InterPro:IPR019147), SWAP/Surp (InterPro:IPR000061); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
NP_851194.1
  • SWAP (Suppressor-of-White-APricot)/surp domain-containing protein; FUNCTIONS IN: RNA binding; INVOLVED IN: RNA processing; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Splicing factor, suppressor of white apricot (InterPro:IPR019147), SWAP/Surp (InterPro:IPR000061); Has 37493 Blast hits to 21004 proteins in 1134 species: Archae - 58; Bacteria - 2223; Metazoa - 18747; Fungi - 3374; Plants - 2679; Viruses - 122; Other Eukaryotes - 10290 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    22361035..22364824 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001345112.1 → NP_001331572.1  SWAP (Suppressor-of-White-APricot)/surp domain-containing protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178UB20, A0A1P8BEC1

  2. NM_001345113.1 → NP_001331571.1  SWAP (Suppressor-of-White-APricot)/surp domain-containing protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178UB20, A0A1P8BEC1

  3. NM_001345111.1 → NP_001331566.1  SWAP (Suppressor-of-White-APricot)/surp domain-containing protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178UB26, A0A1P8BE98

  4. NM_001345110.1 → NP_001331573.1  SWAP (Suppressor-of-White-APricot)/surp domain-containing protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178UB20, A0A1P8BEC1

  5. NM_001345114.1 → NP_001331570.1  SWAP (Suppressor-of-White-APricot)/surp domain-containing protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178UB26, A0A1P8BE98

  6. NM_001345115.1 → NP_001331565.1  SWAP (Suppressor-of-White-APricot)/surp domain-containing protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178UB26, A0A1P8BE98

  7. NM_180863.2 → NP_851194.1  SWAP (Suppressor-of-White-APricot)/surp domain-containing protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_851194.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A654GBC5, B9DFN4
    Conserved Domains (2) summary
    smart00648
    Location:151 → 201
    SWAP; Suppressor-of-White-APricot splicing regulator
    pfam09750
    Location:3 → 113
    DRY_EERY; Alternative splicing regulator

  8. NM_001345116.1 → NP_001331574.1  SWAP (Suppressor-of-White-APricot)/surp domain-containing protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178UB26, A0A1P8BE98

  9. NM_001345107.1 → NP_001331569.1  SWAP (Suppressor-of-White-APricot)/surp domain-containing protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178UB20, A0A1P8BEC1

  10. NM_124892.4 → NP_568820.1  SWAP (Suppressor-of-White-APricot)/surp domain-containing protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_568820.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A654GBC5, Q94BN8
    Conserved Domains (2) summary
    smart00648
    Location:151 → 201
    SWAP; Suppressor-of-White-APricot splicing regulator
    pfam09750
    Location:3 → 113
    DRY_EERY; Alternative splicing regulator

  11. NM_001345109.1 → NP_001331567.1  SWAP (Suppressor-of-White-APricot)/surp domain-containing protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178UB26, A0A1P8BE98

  12. NM_001345108.1 → NP_001331568.1  SWAP (Suppressor-of-White-APricot)/surp domain-containing protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178UB20, A0A1P8BEC1
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.