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LHCB3 light-harvesting chlorophyll B-binding protein 3 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 835515, updated on 18-Sep-2024

Summary

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Official Symbol
LHCB3
Official Full Name
light-harvesting chlorophyll B-binding protein 3
Primary source
TAIR:AT5G54270
Locus tag
AT5G54270
See related
Araport:AT5G54270
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
LHCB3*1; light-harvesting chlorophyll B-binding protein 3; MDK4.9; MDK4_9
Summary
Lhcb3 protein is a component of the main light harvesting chlorophyll a/b-protein complex of Photosystem II (LHC II).
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Genomic context

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See LHCB3 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
3
Sequence:
Chromosome: 5; NC_003076.8 (22038165..22039568)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene cyclic nucleotide-gated cation channel 4 Neighboring gene DNA repair and meiosis protein (Mre11) Neighboring gene myosin 2 Neighboring gene cytochrome c biogenesis protein family Neighboring gene cotton fiber-like protein (DUF761) Neighboring gene ncRNA

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Identification of Lhcb1/Lhcb2/Lhcb3 heterotrimers of the main light-harvesting chlorophyll a/b-protein complex of Photosystem II (LHC II). Jackowski G, et al. Biochim Biophys Acta, 2001 Apr 2. PMID 11245797
  2. Phytotoxicity of chiral herbicide bromacil: Enantioselectivity of photosynthesis in Arabidopsis thaliana. Chen Z, et al. Sci Total Environ, 2016 Apr 1. PMID 26802342
  3. Excitation energy transfer and charge separation are affected in Arabidopsis thaliana mutants lacking light-harvesting chlorophyll a/b binding protein Lhcb3. Adamiec M, et al. J Photochem Photobiol B, 2015 Dec. PMID 26562806
  4. The photosystem II light-harvesting protein Lhcb3 affects the macrostructure of photosystem II and the rate of state transitions in Arabidopsis. Damkjaer JT, et al. Plant Cell, 2009 Oct. PMID 19880802, Free PMC Article
  5. High-light vs. low-light: effect of light acclimation on photosystem II composition and organization in Arabidopsis thaliana. Kouřil R, et al. Biochim Biophys Acta, 2013 Mar. PMID 23274453

See all (20) citations in PubMed

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. Towards spruce-type photosystem II: consequences of the loss of light-harvesting proteins LHCB3 and LHCB6 in Arabidopsis.
    Title: Towards spruce-type photosystem II: consequences of the loss of light-harvesting proteins LHCB3 and LHCB6 in Arabidopsis.
  2. The photosystem II light-harvesting protein Lhcb3 affects the macrostructure of photosystem II and the rate of state transitions in Arabidopsis.
    Title: The photosystem II light-harvesting protein Lhcb3 affects the macrostructure of photosystem II and the rate of state transitions in Arabidopsis.
Submit: New GeneRIF Correction

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

NM_124807.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
Process Evidence Code Pubs
acts_upstream_of_or_within photosynthesis IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in photosynthesis, light harvesting in photosystem II IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in regulation of stomatal movement IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in response to abscisic acid IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in response to herbicide IEP
Inferred from Expression Pattern
more info
 PubMed 
involved_in response to high light intensity IEP
Inferred from Expression Pattern
more info
 PubMed 
Component Evidence Code Pubs
part_of PSII associated light-harvesting complex II IDA
Inferred from Direct Assay
more info
 PubMed 
located_in chloroplast HDA PubMed 
located_in chloroplast ISM
Inferred from Sequence Model
more info
  
located_in chloroplast thylakoid HDA PubMed 
located_in chloroplast thylakoid membrane HDA PubMed 
located_in plastid HDA PubMed 
located_in thylakoid HDA PubMed 
located_in thylakoid membrane IDA
Inferred from Direct Assay
more info
 PubMed 

General protein information

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Preferred Names
light-harvesting chlorophyll B-binding protein 3
NP_200238.1
  • light-harvesting chlorophyll B-binding protein 3 (LHCB3); FUNCTIONS IN: structural molecule activity; INVOLVED IN: photosynthesis; LOCATED IN: light-harvesting complex, thylakoid, chloroplast thylakoid membrane, chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Chlorophyll A-B binding protein (InterPro:IPR001344); BEST Arabidopsis thaliana protein match is: photosystem II light harvesting complex gene 2.1 (TAIR:AT2G05100.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    22038165..22039568
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_124807.4 → NP_200238.1  light-harvesting chlorophyll B-binding protein 3 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_200238.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    C0Z239, Q42016, Q9S7M0
    UniProtKB/TrEMBL
    A0A178USW4, A0A5S9YDV5
    Conserved Domains (1) summary
    PLN00025
    Location:9 → 265
    PLN00025; photosystem II light harvesting chlorophyll a/b binding protein; Provisional
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9S7M0.1

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