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HDG7 homeodomain GLABROUS 7 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 835293, updated on 18-Sep-2024

Summary

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Official Symbol
HDG7
Official Full Name
homeodomain GLABROUS 7
Primary source
TAIR:AT5G52170
Locus tag
AT5G52170
See related
Araport:AT5G52170
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F17P19.7; F17P19_7; homeodomain GLABROUS 7
Summary
Encodes a homeobox-leucine zipper family protein belonging to the HD-ZIP IV family.
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Genomic context

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See HDG7 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
9
Sequence:
Chromosome: 5; NC_003076.8 (21196602..21202664)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene E3 ubiquitin ligase BIG BROTHER-like protein Neighboring gene Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein Neighboring gene transmembrane protein 161AB protein Neighboring gene Sugar isomerase (SIS) family protein Neighboring gene phosphoprotein phosphatase inhibitor Neighboring gene ncRNA Neighboring gene GTP-binding protein 1 Neighboring gene chromosome transmission fidelity-like protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Characterization of the class IV homeodomain-Leucine Zipper gene family in Arabidopsis. Nakamura M, et al. Plant Physiol, 2006 Aug. PMID 16778018, Free PMC Article
  2. AIL and HDG proteins act antagonistically to control cell proliferation. Horstman A, et al. Development, 2015 Feb 1. PMID 25564655
  3. Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes. Riechmann JL, et al. Science, 2000 Dec 15. PMID 11118137
  4. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

GeneRIFs: Gene References Into Functions

General gene information

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Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables DNA-binding transcription factor activity ISS
Inferred from Sequence or Structural Similarity
more info
 PubMed 
enables lipid binding IEA
Inferred from Electronic Annotation
more info
  
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
enables sequence-specific DNA binding IDA
Inferred from Direct Assay
more info
 PubMed 
Process Evidence Code Pubs
acts_upstream_of_positive_effect cell differentiation IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
homeodomain GLABROUS 7
NP_001318786.1
  • homeodomain GLABROUS 7 (HDG7); FUNCTIONS IN: sequence-specific DNA binding, DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent, regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: seedling growth; CONTAINS InterPro DOMAIN/s: Homeobox (InterPro:IPR001356), Homeodomain-like (InterPro:IPR009057), Lipid-binding START (InterPro:IPR002913), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (TAIR:AT4G00730.1); Has 13178 Blast hits to 13134 proteins in 617 species: Archae - 0; Bacteria - 0; Metazoa - 9657; Fungi - 189; Plants - 3110; Viruses - 1; Other Eukaryotes - 221 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    21196602..21202664
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001344987.1 → NP_001332093.1  homeodomain GLABROUS 7 [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8BG00, A0A5S9YDY7

  2. NM_001344986.1 → NP_001318786.1  homeodomain GLABROUS 7 [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9LTK3
    UniProtKB/TrEMBL
    A0A5S9YDY7, A0A7G2FIL6
    Conserved Domains (2) summary
    cd08875
    Location:220 → 425
    START_ArGLABRA2_like; C-terminal lipid-binding START domain of the Arabidopsis homeobox protein GLABRA 2 and related proteins
    pfam00046
    Location:61 → 113
    Homeobox; Homeobox domain

  3. NM_124596.2 → NP_200030.1  homeodomain GLABROUS 7 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_200030.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9LTK3
    UniProtKB/TrEMBL
    A0A5S9YDY7, A0A7G2FIL6
    Conserved Domains (2) summary
    cd08875
    Location:220 → 425
    START_ArGLABRA2_like; C-terminal lipid-binding START domain of the Arabidopsis homeobox protein GLABRA 2 and related proteins
    pfam00046
    Location:61 → 113
    Homeobox; Homeobox domain
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9LTK3.1

Gene LinkOut

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