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AFB5 auxin F-box protein 5 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 835062, updated on 18-Sep-2024

Summary

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Official Symbol
AFB5
Official Full Name
auxin F-box protein 5
Primary source
TAIR:AT5G49980
Locus tag
AT5G49980
See related
Araport:AT5G49980
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
auxin F-box protein 5; K9P8.12; K9P8_12
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Genomic context

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See AFB5 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
3
Sequence:
Chromosome: 5; NC_003076.8 (20333897..20336671, complement)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene ion channel protein Neighboring gene pyridoxin (pyrodoxamine) 5'-phosphate oxidase Neighboring gene Xanthine/uracil permease family protein Neighboring gene Protein kinase superfamily protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Exogenous Auxin Induces Transverse Microtubule Arrays Through TRANSPORT INHIBITOR RESPONSE1/AUXIN SIGNALING F-BOX Receptors. True JH, et al. Plant Physiol, 2020 Feb. PMID 31767691, Free PMC Article
  2. The Arabidopsis Auxin Receptor F-Box Proteins AFB4 and AFB5 Are Required for Response to the Synthetic Auxin Picloram. Prigge MJ, et al. G3 (Bethesda), 2016 May 3. PMID 26976444, Free PMC Article
  3. Defining binding efficiency and specificity of auxins for SCF(TIR1/AFB)-Aux/IAA co-receptor complex formation. Lee S, et al. ACS Chem Biol, 2014 Mar 21. PMID 24313839, Free PMC Article
  4. A combinatorial TIR1/AFB-Aux/IAA co-receptor system for differential sensing of auxin. Calderón Villalobos LI, et al. Nat Chem Biol, 2012 Apr 1. PMID 22466420, Free PMC Article
  5. The auxin signalling network translates dynamic input into robust patterning at the shoot apex. Vernoux T, et al. Mol Syst Biol, 2011 Jul 5. PMID 21734647, Free PMC Article

See all (6) citations in PubMed

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. Exogenous Auxin Induces Transverse Microtubule Arrays Through TRANSPORT INHIBITOR RESPONSE1/AUXIN SIGNALING F-BOX Receptors.
    Title: Exogenous Auxin Induces Transverse Microtubule Arrays Through TRANSPORT INHIBITOR RESPONSE1/AUXIN SIGNALING F-BOX Receptors.
Submit: New GeneRIF Correction

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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NM_124377.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables auxin binding ISS
Inferred from Sequence or Structural Similarity
more info
  
enables auxin receptor activity IPI
Inferred from Physical Interaction
more info
 PubMed 
enables inositol hexakisphosphate binding ISS
Inferred from Sequence or Structural Similarity
more info
  
Process Evidence Code Pubs
involved_in auxin-activated signaling pathway ISS
Inferred from Sequence or Structural Similarity
more info
  
involved_in protein ubiquitination IEA
Inferred from Electronic Annotation
more info
  
involved_in response to auxin IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Component Evidence Code Pubs
part_of SCF ubiquitin ligase complex IPI
Inferred from Physical Interaction
more info
 PubMed 
part_of SCF ubiquitin ligase complex ISS
Inferred from Sequence or Structural Similarity
more info
  
located_in cytoplasm ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
auxin F-box protein 5
NP_568718.1
  • auxin F-box protein 5 (AFB5); CONTAINS InterPro DOMAIN/s: F-box domain, Skp2-like (InterPro:IPR022364); BEST Arabidopsis thaliana protein match is: RNI-like superfamily protein (TAIR:AT4G24390.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    20333897..20336671 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_124377.3 → NP_568718.1  auxin F-box protein 5 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_568718.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q56YW2, Q9LTX2
    UniProtKB/TrEMBL
    A0A178UB83, A0A5S9YEX6
    Conserved Domains (4) summary
    cd09293
    Location:384 → 538
    AMN1; Antagonist of mitotic exit network protein 1
    sd00034
    Location:338 → 362
    LRR_AMN1; leucine-rich repeat [structural motif]
    pfam18511
    Location:51 → 92
    F-box_5
    pfam18791
    Location:111 → 157
    Transp_inhibit; Transport inhibitor response 1 protein domain
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9LTX2.1

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