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Plant invertase/pectin methylesterase inhibitor superfamily [ Arabidopsis thaliana (thale cress) ]

Gene ID: 834977, updated on 18-Sep-2024

Summary

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Official Full Name
Plant invertase/pectin methylesterase inhibitor superfamily
Primary source
TAIR:AT5G49180
Locus tag
AT5G49180
See related
Araport:AT5G49180
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
K21P3.5; K21P3_5
Summary
Encodes a putative pectin methylesterase. The gene is preferentially expressed in floral buds.
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Genomic context

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Location:
chromosome: 5
Exon count:
3
Sequence:
Chromosome: 5; NC_003076.8 (19940462..19943015, complement)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene methyltransferase 1 Neighboring gene uncharacterized protein Neighboring gene sucrose synthase 2 Neighboring gene WD-40 repeat family protein / zfwd4 protein (ZFWD4)

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. PME58 plays a role in pectin distribution during seed coat mucilage extrusion through homogalacturonan modification. Turbant A, et al. J Exp Bot, 2016 Apr. PMID 26895630, Free PMC Article
  2. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. PME58 is the first pectin methylesterases identified to play a direct role in seed mucilage structure.[PME58]
    Title: PME58 plays a role in pectin distribution during seed coat mucilage extrusion through homogalacturonan modification.
Submit: New GeneRIF Correction

General gene information

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Homology

NM_124295.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables enzyme inhibitor activity IEA
Inferred from Electronic Annotation
more info
  
enables pectinesterase activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in cell wall modification IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within mucilage metabolic process involved in seed coat development IMP
Inferred from Mutant Phenotype
more info
 PubMed 
acts_upstream_of_or_within mucilage pectin biosynthetic process IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in pectin catabolic process IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

General protein information

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Preferred Names
Plant invertase/pectin methylesterase inhibitor superfamily
NP_199729.1
  • Plant invertase/pectin methylesterase inhibitor superfamily; FUNCTIONS IN: enzyme inhibitor activity, pectinesterase activity; INVOLVED IN: cell wall modification; LOCATED IN: endomembrane system, cell wall, plant-type cell wall; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 4 anthesis, developing seed stage, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Pectinesterase, active site (InterPro:IPR018040), Pectin lyase fold/virulence factor (InterPro:IPR011050), Pectinesterase, catalytic (InterPro:IPR000070), Pectinesterase inhibitor (InterPro:IPR006501), Pectin lyase fold (InterPro:IPR012334); BEST Arabidopsis thaliana protein match is: Plant invertase/pectin methylesterase inhibitor superfamily (TAIR:AT3G06830.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    19940462..19943015 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_124295.3 → NP_199729.1  Plant invertase/pectin methylesterase inhibitor superfamily [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_199729.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9FJ21
    UniProtKB/TrEMBL
    A0A178UKT8, A0A5S9YEN3
    Conserved Domains (1) summary
    PLN02990
    Location:1 → 571
    PLN02990; Probable pectinesterase/pectinesterase inhibitor
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9FJ21.1

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