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Leucine-rich repeat protein kinase family protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 834618, updated on 18-Sep-2024

Summary

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Official Full Name
Leucine-rich repeat protein kinase family protein
Primary source
TAIR:AT5G45780
Locus tag
AT5G45780
See related
Araport:AT5G45780
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
MRA19.22; MRA19_22
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Genomic context

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Location:
chromosome: 5
Exon count:
11
Sequence:
Chromosome: 5; NC_003076.8 (18566798..18569906, complement)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene receptor like protein 55 Neighboring gene Ribosomal L5P family protein Neighboring gene Ubiquitin carboxyl-terminal hydrolase family protein Neighboring gene Leucine-rich repeat protein kinase family protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A group of receptor kinases are essential for CLAVATA signalling to maintain stem cell homeostasis. Hu C, et al. Nat Plants, 2018 Apr. PMID 29581511
  2. A membrane protein/signaling protein interaction network for Arabidopsis version AMPv2. Lalonde S, et al. Front Physiol, 2010. PMID 21423366, Free PMC Article
  3. An extracellular network of Arabidopsis leucine-rich repeat receptor kinases. Smakowska-Luzan E, et al. Nature, 2018 Jan 18. PMID 29320478, Free PMC Article
  4. Border control--a membrane-linked interactome of Arabidopsis. Jones AM, et al. Science, 2014 May 16. PMID 24833385
  5. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

NM_001344639.1
NM_123946.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables coreceptor activity IGI
Inferred from Genetic Interaction
more info
 PubMed 
enables kinase activity ISS
Inferred from Sequence or Structural Similarity
more info
  
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
enables protein serine/threonine kinase activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within anther development IGI
Inferred from Genetic Interaction
more info
 PubMed 
acts_upstream_of_or_within homeostasis of number of meristem cells IGI
Inferred from Genetic Interaction
more info
 PubMed 
acts_upstream_of_or_within phosphorylation ISS
Inferred from Sequence or Structural Similarity
more info
  
Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
Leucine-rich repeat protein kinase family protein
NP_199390.2
  • Leucine-rich repeat protein kinase family protein; FUNCTIONS IN: protein serine/threonine kinase activity, kinase activity, ATP binding; INVOLVED IN: transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation; LOCATED IN: endomembrane system; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Leucine-rich repeat-containing N-terminal domain, type 2 (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611), Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: NSP-interacting kinase 3 (TAIR:AT1G60800.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    18566798..18569906 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_123946.4 → NP_199390.2  Leucine-rich repeat protein kinase family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_199390.2

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    C0LGU5, Q9FK65
    UniProtKB/TrEMBL
    A0A178UP80, A0A5S9YC00, A0A654G8E6
    Conserved Domains (3) summary
    PLN00113
    Location:39 → 192
    PLN00113; leucine-rich repeat receptor-like protein kinase; Provisional
    sd00033
    Location:129 → 152
    LRR_RI; leucine-rich repeat [structural motif]
    cl21453
    Location:306 → 574
    PKc_like; Protein Kinases, catalytic domain

  2. NM_001344639.1 → NP_001332550.1  Leucine-rich repeat protein kinase family protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8BHA1, A0A7G2FDX2
    Conserved Domains (3) summary
    PLN00113
    Location:1 → 149
    PLN00113; leucine-rich repeat receptor-like protein kinase; Provisional
    sd00033
    Location:86 → 109
    LRR_RI; leucine-rich repeat [structural motif]
    cl21453
    Location:263 → 531
    PKc_like; Protein Kinases, catalytic domain
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
C0LGU5.1

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