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RLT2 Homeodomain-like transcriptional regulator [ Arabidopsis thaliana (thale cress) ]

Gene ID: 834441, updated on 18-Sep-2024

Summary

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Official Symbol
RLT2
Official Full Name
Homeodomain-like transcriptional regulator
Primary source
TAIR:AT5G44180
Locus tag
AT5G44180
See related
Araport:AT5G44180
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
MLN1.10; MLN1_10; RINGLET 2
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Genomic context

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See RLT2 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
19
Sequence:
Chromosome: 5; NC_003076.8 (17782428..17790234)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene C2H2-like zinc finger protein Neighboring gene S-adenosyl-L-methionine-dependent methyltransferases superfamily protein Neighboring gene GOLDEN2-like 2 Neighboring gene CAP-binding protein 20

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Gene networks and chromatin and transcriptional regulation of the phaseolin promoter in Arabidopsis. Sundaram S, et al. Plant Cell, 2013 Jul. PMID 23872538, Free PMC Article
  2. Imitation Switch chromatin remodeling factors and their interacting RINGLET proteins act together in controlling the plant vegetative phase in Arabidopsis. Li G, et al. Plant J, 2012 Oct. PMID 22694359
  3. SLIDE, the protein interacting domain of Imitation Switch remodelers, binds DDT-domain proteins of different subfamilies in chromatin remodeling complexes. Dong J, et al. J Integr Plant Biol, 2013 Oct. PMID 23691993
  4. A plant-specific SWR1 chromatin-remodeling complex couples histone H2A.Z deposition with nucleosome sliding. Luo YX, et al. EMBO J, 2020 Apr 1. PMID 32115743, Free PMC Article
  5. Promoter-based integration in plant defense regulation. Li B, et al. Plant Physiol, 2014 Dec. PMID 25352272, Free PMC Article

See all (9) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

NM_001203541.1
NM_001344536.1
NM_123785.1

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables DNA-binding transcription factor activity ISS
Inferred from Sequence or Structural Similarity
more info
 PubMed 
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
enables transcription cis-regulatory region binding IPI
Inferred from Physical Interaction
more info
 PubMed 
Process Evidence Code Pubs
involved_in negative regulation of DNA-templated transcription IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within vegetative to reproductive phase transition of meristem IGI
Inferred from Genetic Interaction
more info
 PubMed 
Component Evidence Code Pubs
part_of ISWI-type complex IDA
Inferred from Direct Assay
more info
 PubMed 
located_in nucleus IDA
Inferred from Direct Assay
more info
 PubMed 
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
Homeodomain-like transcriptional regulator
NP_001190470.1
  • Homeodomain-like transcriptional regulator; FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent, regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DDT domain superfamily (InterPro:IPR018501), Homeobox (InterPro:IPR001356), DDT domain (InterPro:IPR004022), Homeodomain-like (InterPro:IPR009057), DDT domain, subgroup (InterPro:IPR018500), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: homeobox-1 (TAIR:AT1G28420.1).
NP_001318738.1
  • Homeodomain-like transcriptional regulator; FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent, regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DDT domain superfamily (InterPro:IPR018501), Homeobox (InterPro:IPR001356), Homeodomain-like (InterPro:IPR009057), DDT domain, subgroup (InterPro:IPR018500), DDT domain (InterPro:IPR004022), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: homeobox-1 (TAIR:AT1G28420.1); Has 67503 Blast hits to 37811 proteins in 2117 species: Archae - 251; Bacteria - 7621; Metazoa - 32181; Fungi - 4940; Plants - 2680; Viruses - 355; Other Eukaryotes - 19475 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    17782428..17790234
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001344536.1 → NP_001318738.1  Homeodomain-like transcriptional regulator [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q94B27, Q9FFH1
    UniProtKB/TrEMBL
    A0A654G7W0

  2. NM_123785.1 → NP_199231.1  Homeodomain-like transcriptional regulator [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_199231.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q94B27, Q9FFH1
    UniProtKB/TrEMBL
    A0A654G7W0
    Conserved Domains (9) summary
    pfam00046
    Location:20 → 73
    Homeobox; Homeobox domain
    pfam02791
    Location:515 → 570
    DDT; DDT domain
    pfam05066
    Location:696 → 765
    HARE-HTH; HB1, ASXL, restriction endonuclease HTH domain
    pfam12474
    Location:319 → 462
    PKK; Polo kinase kinase
    pfam15612
    Location:902 → 945
    WHIM1; WSTF, HB1, Itc1p, MBD9 motif 1
    pfam15613
    Location:1072 → 1109
    WHIM2; WSTF, HB1, Itc1p, MBD9 motif 2
    pfam15614
    Location:1111 → 1144
    WHIM3; WSTF, HB1, Itc1p, MBD9 motif 3
    cd16269
    Location:420 → 433
    GBP_C; coiled coil [structural motif]
    cl20817
    Location:336 → 452
    GBP_C; Guanylate-binding protein, C-terminal domain

  3. NM_001203541.1 → NP_001190470.1  Homeodomain-like transcriptional regulator [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001190470.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A654G7W0, F4K8S9
    Conserved Domains (8) summary
    pfam00046
    Location:20 → 73
    Homeobox; Homeobox domain
    pfam02791
    Location:515 → 570
    DDT; DDT domain
    pfam05066
    Location:696 → 765
    HARE-HTH; HB1, ASXL, restriction endonuclease HTH domain
    pfam12474
    Location:319 → 462
    PKK; Polo kinase kinase
    pfam15612
    Location:902 → 945
    WHIM1; WSTF, HB1, Itc1p, MBD9 motif 1
    pfam15613
    Location:1072 → 1109
    WHIM2; WSTF, HB1, Itc1p, MBD9 motif 2
    cd16269
    Location:420 → 433
    GBP_C; coiled coil [structural motif]
    cl20817
    Location:336 → 452
    GBP_C; Guanylate-binding protein, C-terminal domain
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9FFH1.1

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