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DCI1 delta(3,5),delta(2,4)-dienoyl-CoA isomerase 1 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 834346, updated on 18-Sep-2024

Summary

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Official Symbol
DCI1
Official Full Name
delta(3,5),delta(2,4)-dienoyl-CoA isomerase 1
Primary source
TAIR:AT5G43280
Locus tag
AT5G43280
See related
Araport:AT5G43280
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
''delta(3; 4)-DIENOYL-; 4)-dienoyl-CoA isomerase 1; 4)-DIENOYL-COA ISOMERASE 1; 4)-dienoyl-CoA isomerase 1''; 5); ATDCI1; delta(2; DELTA(2; delta(3; DELTA(3; MNL12.10; MNL12_10
Summary
Encodes the peroxisomal delta 3,5-delta2,4-dienoyl-CoA isomerase, a enzyme involved in degradation of unsaturated fatty acids. Gene expression is induced upon seed germination.
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Genomic context

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See DCI1 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
3
Sequence:
Chromosome: 5; NC_003076.8 (17367827..17369510)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene chaperone protein dnaJ-like protein Neighboring gene squamosa promoter binding protein-like 2 Neighboring gene Putative membrane lipoprotein Neighboring gene WRKY DNA-binding protein 49

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Molecular identification and characterization of the Arabidopsis delta(3,5),delta(2,4)-dienoyl-coenzyme A isomerase, a peroxisomal enzyme participating in the beta-oxidation cycle of unsaturated fatty acids. Goepfert S, et al. Plant Physiol, 2005 Aug. PMID 16040662, Free PMC Article
  2. Proteome analysis of Arabidopsis leaf peroxisomes reveals novel targeting peptides, metabolic pathways, and defense mechanisms. Reumann S, et al. Plant Cell, 2007 Oct. PMID 17951448, Free PMC Article
  3. Proximity labeling of protein complexes and cell-type-specific organellar proteomes in Arabidopsis enabled by TurboID. Mair A, et al. Elife, 2019 Sep 19. PMID 31535972, Free PMC Article
  4. Evidence for network evolution in an Arabidopsis interactome map. Arabidopsis Interactome Mapping Consortium. Science, 2011 Jul 29. PMID 21798944, Free PMC Article
  5. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

GeneRIFs: Gene References Into Functions

Pathways from PubChem

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Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

NM_001085229.1
NM_123694.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables delta(3,5)-delta(2,4)-dienoyl-CoA isomerase activity IDA
Inferred from Direct Assay
more info
 PubMed 
enables delta(3,5)-delta(2,4)-dienoyl-CoA isomerase activity IGI
Inferred from Genetic Interaction
more info
 PubMed 
Process Evidence Code Pubs
involved_in fatty acid beta-oxidation IDA
Inferred from Direct Assay
more info
 PubMed 
involved_in fatty acid beta-oxidation IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within fatty acid catabolic process TAS
Traceable Author Statement
more info
 PubMed 
Component Evidence Code Pubs
located_in chloroplast ISM
Inferred from Sequence Model
more info
  
located_in peroxisome HDA PubMed 
located_in peroxisome IDA
Inferred from Direct Assay
more info
 PubMed 

General protein information

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Preferred Names
delta(3,5),delta(2,4)-dienoyl-CoA isomerase 1
NP_001078698.1
  • ''delta(3,5),delta(2,4)-dienoyl-CoA isomerase 1'' (DCI1); FUNCTIONS IN: enoyl-CoA hydratase activity, delta3,5-delta2,4-dienoyl-CoA isomerase activity; INVOLVED IN: fatty acid catabolic process, seed germination, metabolic process; LOCATED IN: peroxisome; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Enoyl-CoA hydratase/isomerase, conserved site (InterPro:IPR018376), Crotonase, core (InterPro:IPR001753); BEST Arabidopsis thaliana protein match is: ATP-dependent caseinolytic (Clp) protease/crotonase family protein (TAIR:AT4G16800.1); Has 36679 Blast hits to 36669 proteins in 2260 species: Archae - 469; Bacteria - 24045; Metazoa - 1683; Fungi - 913; Plants - 624; Viruses - 0; Other Eukaryotes - 8945 (source: NCBI BLink).
NP_199142.1
  • ''delta(3,5),delta(2,4)-dienoyl-CoA isomerase 1'' (DCI1); FUNCTIONS IN: enoyl-CoA hydratase activity, delta3,5-delta2,4-dienoyl-CoA isomerase activity; INVOLVED IN: fatty acid catabolic process, seed germination, metabolic process; LOCATED IN: peroxisome; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Enoyl-CoA hydratase/isomerase, conserved site (InterPro:IPR018376), Crotonase, core (InterPro:IPR001753); BEST Arabidopsis thaliana protein match is: ATP-dependent caseinolytic (Clp) protease/crotonase family protein (TAIR:AT4G16800.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    17367827..17369510
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_123694.4 → NP_199142.1  delta(3,5),delta(2,4)-dienoyl-CoA isomerase 1 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_199142.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    A8MRJ9, Q9FHR8
    UniProtKB/TrEMBL
    A0A5S9YB50, A0A654G833
    Conserved Domains (1) summary
    PLN02664
    Location:3 → 278
    PLN02664; enoyl-CoA hydratase/delta3,5-delta2,4-dienoyl-CoA isomerase

  2. NM_001085229.1 → NP_001078698.1  delta(3,5),delta(2,4)-dienoyl-CoA isomerase 1 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001078698.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9FHR8
    Conserved Domains (1) summary
    cl23717
    Location:3 → 215
    crotonase-like; Crotonase/Enoyl-Coenzyme A (CoA) hydratase superfamily. This superfamily contains a diverse set of enzymes including enoyl-CoA hydratase, napthoate synthase, methylmalonyl-CoA decarboxylase, 3-hydoxybutyryl-CoA dehydratase, and dienoyl-CoA isomerase. ...
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9FHR8.1

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