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Smp_174580 vesicular integral-membrane protein vip36 (mannose-binding lectin 2)-related [ Schistosoma mansoni ]

Gene ID: 8341653, updated on 19-Jun-2024

Summary

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Gene symbol
Smp_174580
Gene description
vesicular integral-membrane protein vip36 (mannose-binding lectin 2)-related
Locus tag
Smp_174580
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Schistosoma mansoni (strain: Puerto Rico)
Lineage
Eukaryota; Metazoa; Spiralia; Lophotrochozoa; Platyhelminthes; Trematoda; Digenea; Strigeidida; Schistosomatoidea; Schistosomatidae; Schistosoma
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Genomic context

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Location:
chromosome: Unknown
Exon count:
7

NW_017386077.1Genomic Context describing neighboring genes Neighboring gene tRNA Neighboring gene 4.1 G protein, putative Neighboring gene hypothetical protein Neighboring gene hypothetical protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_017386077.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Molecular characterization of transport lectin vesicular integral membrane protein 36 kDa (VIP36) in the life cycle of Schistosoma mansoni. Ornelas AMM, et al. Parasitol Res, 2017 Oct. PMID 28840376
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. SmVIP36 might participate in the complex secretory activity within the egg envelope and tegument proteins, both important for the stages of the parasite that interact with the host.
    Title: Molecular characterization of transport lectin vesicular integral membrane protein 36 kDa (VIP36) in the life cycle of Schistosoma mansoni.
Submit: New GeneRIF Correction

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables D-mannose binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in Golgi organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in endoplasmic reticulum organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in endoplasmic reticulum to Golgi vesicle-mediated transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in COPII-coated ER to Golgi transport vesicle IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in Golgi membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in endoplasmic reticulum membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in endoplasmic reticulum-Golgi intermediate compartment IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
vesicular integral-membrane protein vip36 (mannose-binding lectin 2)-related

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NW_017386077.1 Reference assembly

    Range
    267502..289241 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_018793276.1 → XP_018647168.1  vesicular integral-membrane protein vip36 (mannose-binding lectin 2)-related [Schistosoma mansoni]

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    G4M103
Protein Accession Links
GenPept Link UniProtKB Link
CCD60821.1

Gene LinkOut

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Molecular Biology Databases
Research Materials