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RPS1 ribosomal protein S1 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 833138, updated on 18-Sep-2024

Summary

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Official Symbol
RPS1
Official Full Name
ribosomal protein S1
Primary source
TAIR:AT5G30510
Locus tag
AT5G30510
See related
Araport:AT5G30510
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
ARRPS1; plastid ribosomal protein S1; PRPS1; ribosomal protein S1
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Genomic context

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See RPS1 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
7
Sequence:
Chromosome: 5; NC_003076.8 (11619000..11621298, complement)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene craniofacial development-like protein Neighboring gene Nucleotide-diphospho-sugar transferases superfamily protein Neighboring gene pseudo Neighboring gene pseudo

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. GUN1 Controls Accumulation of the Plastid Ribosomal Protein S1 at the Protein Level and Interacts with Proteins Involved in Plastid Protein Homeostasis. Tadini L, et al. Plant Physiol, 2016 Mar. PMID 26823545, Free PMC Article
  2. Breaking restricted taxonomic functionality by dual resistance genes. Narusaka M, et al. Plant Signal Behav, 2013 Jun. PMID 23518587, Free PMC Article
  3. Downregulation of chloroplast RPS1 negatively modulates nuclear heat-responsive expression of HsfA2 and its target genes in Arabidopsis. Yu HD, et al. PLoS Genet, 2012. PMID 22570631, Free PMC Article
  4. Interfamily transfer of dual NB-LRR genes confers resistance to multiple pathogens. Narusaka M, et al. PLoS One, 2013. PMID 23437080, Free PMC Article
  5. The function of RH22, a DEAD RNA helicase, in the biogenesis of the 50S ribosomal subunits of Arabidopsis chloroplasts. Chi W, et al. Plant Physiol, 2012 Feb. PMID 22170977, Free PMC Article

See all (15) citations in PubMed

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. Data show that the the genomes uncoupled 1 (gun1) mutation genetically interacts with mutations of genes for the chloroplast ribosomal proteins S1 (PRPS1).
    Title: GUN1 Controls Accumulation of the Plastid Ribosomal Protein S1 at the Protein Level and Interacts with Proteins Involved in Plastid Protein Homeostasis.
  2. properly function in two other Brassicaceae, properly function for pathogen resistance in two other Brassicaceae, Brassica rapa and B. napus, but also in two Solanaceae, Nicotiana benthamiana and tomato (Solanum lycopersicum)
    Title: Breaking restricted taxonomic functionality by dual resistance genes.
  3. A pair of Arabidopsis nucleotide binding and leucine rich repeat-type R genes, RPS4 and RRS1, properly function in two other Brassicaceae, Brassica rapa and Brassica napus, but also in two Solanaceae, Nicotiana benthamiana and tomato.
    Title: Interfamily transfer of dual NB-LRR genes confers resistance to multiple pathogens.
  4. We have established a previously unrecognized molecular connection between the downregulation of RPS1 expression in chloroplast and the activation of HsfA2-dependent heat-responsive genes in nucleus, which is required for heat tolerance in higher plants
    Title: Downregulation of chloroplast RPS1 negatively modulates nuclear heat-responsive expression of HsfA2 and its target genes in Arabidopsis.
Submit: New GeneRIF Correction

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

NM_180572.2

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables mRNA binding HDA PubMed 
enables mRNA binding IDA
Inferred from Direct Assay
more info
 PubMed 
Component Evidence Code Pubs
located_in chloroplast HDA PubMed 
located_in chloroplast ISM
Inferred from Sequence Model
more info
  
located_in chloroplast stroma HDA PubMed 
located_in plastid HDA PubMed 
located_in thylakoid HDA PubMed 

General protein information

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Preferred Names
ribosomal protein S1
NP_850903.1
  • ribosomal protein S1 (RPS1); FUNCTIONS IN: RNA binding; LOCATED IN: thylakoid, chloroplast stroma, chloroplast, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Nucleic acid-binding, OB-fold (InterPro:IPR012340), Ribosomal protein S1, RNA-binding domain (InterPro:IPR003029); BEST Arabidopsis thaliana protein match is: Nucleic acid-binding proteins superfamily (TAIR:AT1G71720.1); Has 27453 Blast hits to 18967 proteins in 2720 species: Archae - 77; Bacteria - 20681; Metazoa - 178; Fungi - 177; Plants - 343; Viruses - 0; Other Eukaryotes - 5997 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    11619000..11621298 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_180572.2 → NP_850903.1  ribosomal protein S1 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_850903.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q93VC7
    UniProtKB/TrEMBL
    A0A178ULV9, A0A5S9XS40, C0Z2U7
    Conserved Domains (1) summary
    PRK07400
    Location:71 → 367
    PRK07400; 30S ribosomal protein S1; Reviewed
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q93VC7.1

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