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Protein prenylyltransferase superfamily protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 832898, updated on 18-Sep-2024

Summary

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Official Full Name
Protein prenylyltransferase superfamily protein
Primary source
TAIR:AT5G28220
Locus tag
AT5G28220
See related
Araport:AT5G28220
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F26C17.8; F26C17_8
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Genomic context

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Location:
chromosome: 5
Exon count:
9
Sequence:
Chromosome: 5; NC_003076.8 (10190357..10193123, complement)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene pseudo Neighboring gene mRNA capping enzyme family protein Neighboring gene pseudo Neighboring gene miscRNA

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

GeneRIFs: Gene References Into Functions

General gene information

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NM_122705.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
Protein prenylyltransferase superfamily protein
NP_198174.2
  • Protein prenylyltransferase superfamily protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide repeat-containing (InterPro:IPR013026); BEST Arabidopsis thaliana protein match is: Protein prenylyltransferase superfamily protein (TAIR:AT3G04830.1); Has 532 Blast hits to 529 proteins in 210 species: Archae - 27; Bacteria - 37; Metazoa - 228; Fungi - 111; Plants - 54; Viruses - 0; Other Eukaryotes - 75 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    10190357..10193123 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_122705.4 → NP_198174.2  Protein prenylyltransferase superfamily protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_198174.2

    Status: REVIEWED

    UniProtKB/TrEMBL
    F4K725, Q9S9L2
    Conserved Domains (2) summary
    TIGR03939
    Location:51 → 185
    PGA_TPR_OMP; poly-beta-1,6 N-acetyl-D-glucosamine export porin PgaA
    sd00006
    Location:115 → 139
    TPR; TPR repeat [structural motif]
Nucleotide Protein
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