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YUC6 Flavin-binding monooxygenase family protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 832638, updated on 18-Sep-2024

Summary

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Official Symbol
YUC6
Official Full Name
Flavin-binding monooxygenase family protein
Primary source
TAIR:AT5G25620
Locus tag
AT5G25620
See related
Araport:AT5G25620
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
AtYUC6; T14C9.160; T14C9_160; YUCCA6
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Genomic context

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See YUC6 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
4
Sequence:
Chromosome: 5; NC_003076.8 (8934941..8938768, complement)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene pseudo Neighboring gene tRNA-Phe Neighboring gene Tetratricopeptide repeat (TPR)-like superfamily protein Neighboring gene Rhomboid-related intramembrane serine protease family protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. Arabidopsis plants overexpressing YUC6 display enhanced IAA-related phenotypes and exhibit improved drought stress tolerance, low rate of water loss and controlled ROS accumulation under drought and oxidative stresses.
    Title: A novel thiol-reductase activity of Arabidopsis YUC6 confers drought tolerance independently of auxin biosynthesis.
  2. Transgenic poplar expressing Arabidopsis YUCCA6 exhibits auxin-overproduction phenotypes and increased tolerance to abiotic stress.
    Title: Transgenic poplar expressing Arabidopsis YUCCA6 exhibits auxin-overproduction phenotypes and increased tolerance to abiotic stress.
  3. YUCCA6 enhances drought tolerance through regulated reactive oxygen species homeostasis
    Title: Roles of YUCCAs in auxin biosynthesis and drought stress responses in plants.
  4. a functional YUCCA pathway of auxin biosynthesis in potato
    Title: Overexpression of Arabidopsis YUCCA6 in potato results in high-auxin developmental phenotypes and enhanced resistance to water deficit.
  5. YUC6 uses NADPH and oxygen to convert indole-3-pyruvic acid to indole-3-acetic acid.
    Title: The biochemical mechanism of auxin biosynthesis by an arabidopsis YUCCA flavin-containing monooxygenase.
  6. Arabidopsis plants over-expressing YUCCA6 displayed dramatic longevity. In addition, plants over-expressing YUCCA6 exhibited classical, delayed dark-induced and hormone-induced senescence in leaves.
    Title: YUCCA6 over-expression demonstrates auxin function in delaying leaf senescence in Arabidopsis thaliana.
  7. SPL regulates auxin homeostasis by repressing the transcription of YUC2 and YUC6 and participates in lateral organ morphogenesis.
    Title: SPOROCYTELESS modulates YUCCA expression to regulate the development of lateral organs in Arabidopsis.
  8. results identify YUCCA6 as a functional member of the YUCCA family with unique roles in growth and development
    Title: yucca6, a dominant mutation in Arabidopsis, affects auxin accumulation and auxin-related phenotypes.
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General gene information

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NM_001203470.1
NM_122473.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables N,N-dimethylaniline monooxygenase activity IEA
Inferred from Electronic Annotation
more info
  
enables NADP binding IEA
Inferred from Electronic Annotation
more info
  
enables flavin adenine dinucleotide binding IEA
Inferred from Electronic Annotation
more info
  
enables indole-3-pyruvate monooxygenase activity IEA
Inferred from Electronic Annotation
more info
  
enables protein-disulfide reductase (NAD(P)H) activity IDA
Inferred from Direct Assay
more info
 PubMed 
Process Evidence Code Pubs
involved_in auxin biosynthetic process IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within auxin biosynthetic process IMP
Inferred from Mutant Phenotype
more info
 PubMed 
acts_upstream_of_or_within drought recovery IMP
Inferred from Mutant Phenotype
more info
 PubMed 
acts_upstream_of_or_within response to ethylene IEP
Inferred from Expression Pattern
more info
 PubMed 
involved_in response to metal ion IDA
Inferred from Direct Assay
more info
 PubMed 
acts_upstream_of_or_within response to oxidative stress IMP
Inferred from Mutant Phenotype
more info
 PubMed 
acts_upstream_of_or_within somatic embryogenesis IEP
Inferred from Expression Pattern
more info
 PubMed 
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

General protein information

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Preferred Names
Flavin-binding monooxygenase family protein
NP_001190399.2
  • YUCCA6 (YUC6); FUNCTIONS IN: NADP or NADPH binding, oxidoreductase activity, monooxygenase activity, FAD binding, flavin-containing monooxygenase activity; INVOLVED IN: auxin biosynthetic process; EXPRESSED IN: sepal; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Pyridine nucleotide-disulphide oxidoreductase, class-II (InterPro:IPR000103), FAD-dependent pyridine nucleotide-disulphide oxidoreductase (InterPro:IPR013027), Flavin-containing monooxygenase-like (InterPro:IPR020946); BEST Arabidopsis thaliana protein match is: Flavin-binding monooxygenase family protein (TAIR:AT4G13260.1).
NP_197944.2
  • YUCCA6 (YUC6); FUNCTIONS IN: NADP or NADPH binding, oxidoreductase activity, monooxygenase activity, FAD binding, flavin-containing monooxygenase activity; INVOLVED IN: auxin biosynthetic process; EXPRESSED IN: sepal; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Pyridine nucleotide-disulphide oxidoreductase, class-II (InterPro:IPR000103), FAD-dependent pyridine nucleotide-disulphide oxidoreductase (InterPro:IPR013027), Flavin-containing monooxygenase-like (InterPro:IPR020946); BEST Arabidopsis thaliana protein match is: Flavin-binding monooxygenase family protein (TAIR:AT4G13260.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    8934941..8938768 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_122473.3 → NP_197944.2  Flavin-binding monooxygenase family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_197944.2

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q8VZ59
    UniProtKB/TrEMBL
    A0A178UES9, A0A5S9Y7R2
    Conserved Domains (1) summary
    COG2072
    Location:33 → 353
    CzcO; Predicted flavoprotein CzcO associated with the cation diffusion facilitator CzcD [Inorganic ion transport and metabolism]

  2. NM_001203470.1 → NP_001190399.2  Flavin-binding monooxygenase family protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178UES9, A0A5S9Y7R2, F4JY69
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q8VZ59.1

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