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AT5G22610 F-box/RNI-like/FBD-like domains-containing protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 832324, updated on 6-Oct-2023

Summary

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Gene symbol
AT5G22610
Gene description
F-box/RNI-like/FBD-like domains-containing protein
Primary source
Araport:AT5G22610
Locus tag
AT5G22610
See related
TAIR:AT5G22610
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
MDJ22.3; MDJ22_3
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Genomic context

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See AT5G22610 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
4
Sequence:
Chromosome: 5; NC_003076.8 (7515217..7516976)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene FBD / Leucine Rich Repeat domains containing protein Neighboring gene ncRNA Neighboring gene uncharacterized protein Neighboring gene phosphoglycerate/bisphosphoglycerate mutase family protein Neighboring gene arogenate dehydratase 5 Neighboring gene MORN (Membrane Occupation and Recognition Nexus) repeat-containing protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Interactome of the plant-specific ESCRT-III component AtVPS2.2 in Arabidopsis thaliana. Ibl V, et al. J Proteome Res, 2012 Jan 1. PMID 22010978, Free PMC Article
  2. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

General protein information

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Preferred Names
F-box/RNI-like/FBD-like domains-containing protein
NP_197653.2
  • F-box/RNI-like/FBD-like domains-containing protein; CONTAINS InterPro DOMAIN/s: FBD (InterPro:IPR013596), F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364), FBD-like (InterPro:IPR006566), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: F-box/RNI-like/FBD-like domains-containing protein (TAIR:AT5G22730.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    7515217..7516976
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_122167.3 → NP_197653.2  F-box/RNI-like/FBD-like domains-containing protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_197653.2

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178UI13
    Conserved Domains (4) summary
    smart00579
    Location:363 → 435
    FBD; domain in FBox and BRCT domain containing plant proteins
    sd00032
    Location:150 → 172
    LRR_2; leucine-rich repeat [structural motif]
    pfam07723
    Location:172 → 196
    LRR_2; Leucine Rich Repeat
    pfam00646
    Location:18 → 54
    F-box; F-box domain

  2. NM_001343742.1 → NP_001331747.1  F-box/RNI-like/FBD-like domains-containing protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    F4K9Y5, Q9FNK0
    Conserved Domains (4) summary
    smart00579
    Location:393 → 465
    FBD; domain in FBox and BRCT domain containing plant proteins
    sd00032
    Location:150 → 172
    LRR_2; leucine-rich repeat [structural motif]
    pfam07723
    Location:172 → 196
    LRR_2; Leucine Rich Repeat
    pfam00646
    Location:18 → 54
    F-box; F-box domain
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9FNK0.1

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