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LAC10 laccase 10 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 831697, updated on 18-Sep-2024

Summary

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Official Symbol
LAC10
Official Full Name
laccase 10
Primary source
TAIR:AT5G01190
Locus tag
AT5G01190
See related
Araport:AT5G01190
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F7J8.170; F7J8_170; laccase 10
Summary
putative laccase, a member of laccase family of genes (17 members in Arabidopsis).
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Genomic context

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See LAC10 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
6
Sequence:
Chromosome: 5; NC_003076.8 (72292..74769)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene peptide transporter 5 Neighboring gene pseudo Neighboring gene Duplicated homeodomain-like superfamily protein Neighboring gene ncRNA Neighboring gene HXXXD-type acyl-transferase family protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Laccases and Peroxidases Co-Localize in Lignified Secondary Cell Walls throughout Stem Development. Hoffmann N, et al. Plant Physiol, 2020 Oct. PMID 32699027, Free PMC Article
  2. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714
  3. Multi-omics network-based functional annotation of unknown Arabidopsis genes. Depuydt T, et al. Plant J, 2021 Nov. PMID 34562334

GeneRIFs: Gene References Into Functions

General gene information

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Homology

NM_001342578.1
NM_120197.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables copper ion binding IEA
Inferred from Electronic Annotation
more info
  
enables hydroquinone:oxygen oxidoreductase activity IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in extracellular region ISM
Inferred from Sequence Model
more info
  
located_in plant-type cell wall IDA
Inferred from Direct Assay
more info
 PubMed 

General protein information

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Preferred Names
laccase 10
NP_195739.2
  • laccase 10 (LAC10); FUNCTIONS IN: laccase activity; INVOLVED IN: oxidation reduction, lignin catabolic process; LOCATED IN: endomembrane system, apoplast; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Multicopper oxidase, type 3 (InterPro:IPR011707), Laccase (InterPro:IPR017761), Multicopper oxidase, type 2 (InterPro:IPR011706), Cupredoxin (InterPro:IPR008972), Multicopper oxidase, copper-binding site (InterPro:IPR002355), Multicopper oxidase, type 1 (InterPro:IPR001117); BEST Arabidopsis thaliana protein match is: Laccase/Diphenol oxidase family protein (TAIR:AT2G38080.1); Has 9531 Blast hits to 8327 proteins in 1383 species: Archae - 24; Bacteria - 3756; Metazoa - 439; Fungi - 3375; Plants - 1571; Viruses - 0; Other Eukaryotes - 366 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    72292..74769
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_120197.4 → NP_195739.2  laccase 10 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_195739.2

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q6ID18, Q9LFB7
    UniProtKB/TrEMBL
    A0A178U8N5, A0A5S9Y111
    Conserved Domains (4) summary
    cd13849
    Location:27 → 143
    CuRO_1_LCC_plant; The first cupredoxin domain of plant laccases
    cd13875
    Location:158 → 305
    CuRO_2_LCC_plant; The second cupredoxin domain of the plant laccases
    cd13897
    Location:404 → 541
    CuRO_3_LCC_plant; The third cupredoxin domain of the plant laccases
    TIGR03389
    Location:22 → 558
    laccase; laccase, plant

  2. NM_001342578.1 → NP_001332650.1  laccase 10 [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178U8N5, A0A1R7T3A1, A0A5S9Y111
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q6ID18.1

Gene LinkOut

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