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EMB1241 Co-chaperone GrpE family protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 831638, updated on 18-Sep-2024

Summary

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Official Symbol
EMB1241
Official Full Name
Co-chaperone GrpE family protein
Primary source
TAIR:AT5G17710
Locus tag
AT5G17710
See related
Araport:AT5G17710
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
embryo defective 1241; MVA3.60; MVA3_60
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Genomic context

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See EMB1241 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
4
Sequence:
Chromosome: 5; NC_003076.8 (5839163..5841858, complement)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene MATE efflux family protein Neighboring gene ncRNA Neighboring gene alpha/beta-Hydrolases superfamily protein Neighboring gene pseudo

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Two Arabidopsis Chloroplast GrpE Homologues Exhibit Distinct Biological Activities and Can Form Homo- and Hetero-Oligomers. Su PH, et al. Front Plant Sci, 2019. PMID 32038688, Free PMC Article
  2. Functional analysis of the Chloroplast GrpE (CGE) proteins from Arabidopsis thaliana. de Luna-Valdez LA, et al. Plant Physiol Biochem, 2019 Jun. PMID 30927692
  3. High light response of the thylakoid proteome in arabidopsis wild type and the ascorbate-deficient mutant vtc2-2. A comparative proteomics study. Giacomelli L, et al. Plant Physiol, 2006 Jun. PMID 16648217, Free PMC Article
  4. Divalent metal ions in plant mitochondria and their role in interactions with proteins and oxidative stress-induced damage to respiratory function. Tan YF, et al. Plant Physiol, 2010 Feb. PMID 20018591, Free PMC Article
  5. The oligomeric stromal proteome of Arabidopsis thaliana chloroplasts. Peltier JB, et al. Mol Cell Proteomics, 2006 Jan. PMID 16207701

See all (13) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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NM_001343522.1
NM_121777.3
NM_180509.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables adenyl-nucleotide exchange factor activity IEA
Inferred from Electronic Annotation
more info
  
enables copper ion binding HDA PubMed 
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
enables protein homodimerization activity IEA
Inferred from Electronic Annotation
more info
  
enables protein-folding chaperone binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within cellular response to heat IGI
Inferred from Genetic Interaction
more info
 PubMed 
acts_upstream_of_or_within embryo development ending in seed dormancy NAS
Non-traceable Author Statement
more info
  
acts_upstream_of_or_within protein folding IDA
Inferred from Direct Assay
more info
 PubMed 
involved_in protein folding IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within protein stabilization IGI
Inferred from Genetic Interaction
more info
 PubMed 
Component Evidence Code Pubs
located_in chloroplast HDA PubMed 
located_in chloroplast IDA
Inferred from Direct Assay
more info
 PubMed 
located_in chloroplast envelope IDA
Inferred from Direct Assay
more info
 PubMed 
located_in chloroplast stroma HDA PubMed 
located_in chloroplast stroma IDA
Inferred from Direct Assay
more info
 PubMed 
located_in plastid HDA PubMed 
located_in thylakoid HDA PubMed 

General protein information

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Preferred Names
Co-chaperone GrpE family protein
NP_001318588.1
  • embryo defective 1241 (EMB1241); FUNCTIONS IN: copper ion binding; INVOLVED IN: protein folding, embryo development ending in seed dormancy; LOCATED IN: thylakoid, chloroplast, chloroplast stroma; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: GrpE nucleotide exchange factor (InterPro:IPR000740), GrpE nucleotide exchange factor, coiled-coil (InterPro:IPR013805), GrpE nucleotide exchange factor, head (InterPro:IPR009012); BEST Arabidopsis thaliana protein match is: Co-chaperone GrpE family protein (TAIR:AT1G36390.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
NP_850840.1
  • embryo defective 1241 (EMB1241); FUNCTIONS IN: copper ion binding; INVOLVED IN: protein folding, embryo development ending in seed dormancy; LOCATED IN: thylakoid, chloroplast; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: GrpE nucleotide exchange factor (InterPro:IPR000740), GrpE nucleotide exchange factor, coiled-coil (InterPro:IPR013805), GrpE nucleotide exchange factor, head (InterPro:IPR009012); BEST Arabidopsis thaliana protein match is: Co-chaperone GrpE family protein (TAIR:AT1G36390.2); Has 8394 Blast hits to 8358 proteins in 2682 species: Archae - 138; Bacteria - 5138; Metazoa - 231; Fungi - 167; Plants - 159; Viruses - 7; Other Eukaryotes - 2554 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    5839163..5841858 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001343522.1 → NP_001318588.1  Co-chaperone GrpE family protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A5S9Y514, Q94K56

  2. NM_180509.4 → NP_850840.1  Co-chaperone GrpE family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_850840.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178U8H4, A0A5S9Y514, Q9FN80, Q9XQC7
    Conserved Domains (2) summary
    cd00446
    Location:163 → 210
    GrpE; 2-helical coiled coil [structural motif]
    cl03075
    Location:154 → 316
    GrpE; nucleotide exchange factor GrpE

  3. NM_121777.3 → NP_568356.1  Co-chaperone GrpE family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_568356.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A5S9Y514, Q94K56
    Conserved Domains (2) summary
    cd00446
    Location:161 → 208
    GrpE; 2-helical coiled coil [structural motif]
    cl03075
    Location:152 → 314
    GrpE; nucleotide exchange factor GrpE
Nucleotide Protein
Heading Accession and Version

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