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Leucine-rich repeat protein kinase family protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 831553, updated on 18-Sep-2024

Summary

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Official Full Name
Leucine-rich repeat protein kinase family protein
Primary source
TAIR:AT5G16900
Locus tag
AT5G16900
See related
Araport:AT5G16900
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F2K13.50; F2K13_50; LEAF AND FLOWER RELATED; LFR
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Genomic context

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Location:
chromosome: 5
Exon count:
14
Sequence:
Chromosome: 5; NC_003076.8 (5555057..5559997)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene Target of Myb protein 1 Neighboring gene Exostosin family protein Neighboring gene cellulose-synthase like D2 Neighboring gene Fasciclin-like arabinogalactan family protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. An extracellular network of Arabidopsis leucine-rich repeat receptor kinases. Smakowska-Luzan E, et al. Nature, 2018 Jan 18. PMID 29320478, Free PMC Article
  2. Border control--a membrane-linked interactome of Arabidopsis. Jones AM, et al. Science, 2014 May 16. PMID 24833385
  3. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables kinase activity ISS
Inferred from Sequence or Structural Similarity
more info
  
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
enables protein kinase activity IEA
Inferred from Electronic Annotation
more info
  
enables protein serine/threonine kinase activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within phosphorylation ISS
Inferred from Sequence or Structural Similarity
more info
  
Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
Leucine-rich repeat protein kinase family protein
NP_001318574.1
  • Leucine-rich repeat protein kinase family protein; FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: endomembrane system; EXPRESSED IN: embryo, leaf whorl, sperm cell, sepal, root; EXPRESSED DURING: petal differentiation and expansion stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Leucine-rich repeat (InterPro:IPR001611), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: Leucine-rich repeat protein kinase family protein (TAIR:AT1G07560.1); Has 168111 Blast hits to 123484 proteins in 4541 species: Archae - 113; Bacteria - 13955; Metazoa - 44789; Fungi - 10304; Plants - 79478; Viruses - 406; Other Eukaryotes - 19066 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    5555057..5559997
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001343470.1 → NP_001318574.1  Leucine-rich repeat protein kinase family protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    C0LGT5, Q9LFL1
    UniProtKB/TrEMBL
    A0A178UN21

  2. NM_001343471.1 → NP_001331986.1  Leucine-rich repeat protein kinase family protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8BFJ0

  3. NM_121696.3 → NP_197192.2  Leucine-rich repeat protein kinase family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_197192.2

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    C0LGT5, Q9LFL1
    UniProtKB/TrEMBL
    A0A178UN21
    Conserved Domains (4) summary
    smart00221
    Location:575 → 842
    STYKc; Protein kinase; unclassified specificity
    cd14066
    Location:579 → 844
    STKc_IRAK; Catalytic domain of the Serine/Threonine kinases, Interleukin-1 Receptor Associated Kinases and related STKs
    sd00033
    Location:419 → 439
    LRR_RI; leucine-rich repeat [structural motif]
    pfam12819
    Location:27 → 357
    Malectin_like; Carbohydrate-binding protein of the ER

  4. NM_001343472.1 → NP_001331987.1  Leucine-rich repeat protein kinase family protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8BFK6
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
C0LGT5.1

Gene LinkOut

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