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leucine-rich repeat transmembrane protein kinase family protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 830893, updated on 18-Sep-2024

Summary

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Official Full Name
leucine-rich repeat transmembrane protein kinase family protein
Primary source
TAIR:AT5G10290
Locus tag
AT5G10290
See related
Araport:AT5G10290
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F18D22.60; F18D22_60
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Genomic context

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Location:
chromosome: 5
Exon count:
11
Sequence:
Chromosome: 5; NC_003076.8 (3235258..3238808, complement)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene myb domain protein 92 Neighboring gene methyl esterase 5 Neighboring gene EPIDERMAL PATTERNING FACTOR-like protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The Arabidopsis thioredoxin TRXh5regulates the S-nitrosylation pattern of the TIRK receptor being both proteins essential in the modulation of defences to Tetranychus urticae. Arnaiz A, et al. Redox Biol, 2023 Nov. PMID 37797370, Free PMC Article
  2. A brassinosteroid-signaling kinase interacts with multiple receptor-like kinases in Arabidopsis. Xu P, et al. Mol Plant, 2014 Feb. PMID 24051702, Free PMC Article
  3. A membrane protein/signaling protein interaction network for Arabidopsis version AMPv2. Lalonde S, et al. Front Physiol, 2010. PMID 21423366, Free PMC Article
  4. An extracellular network of Arabidopsis leucine-rich repeat receptor kinases. Smakowska-Luzan E, et al. Nature, 2018 Jan 18. PMID 29320478, Free PMC Article
  5. Border control--a membrane-linked interactome of Arabidopsis. Jones AM, et al. Science, 2014 May 16. PMID 24833385

See all (7) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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NM_001343098.1
NM_121067.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables identical protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
enables kinase activity ISS
Inferred from Sequence or Structural Similarity
more info
  
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
enables protein serine/threonine kinase activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in defense response to insect IEP
Inferred from Expression Pattern
more info
 PubMed 
Component Evidence Code Pubs
located_in plasma membrane HDA PubMed 
located_in plasma membrane IDA
Inferred from Direct Assay
more info
 PubMed 
located_in plasma membrane ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
leucine-rich repeat transmembrane protein kinase family protein
NP_196591.2
  • leucine-rich repeat transmembrane protein kinase family protein; FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: plasma membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Leucine-rich repeat-containing N-terminal domain, type 2 (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611), Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: Leucine-rich repeat protein kinase family protein (TAIR:AT5G65240.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    3235258..3238808 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_121067.4 → NP_196591.2  leucine-rich repeat transmembrane protein kinase family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_196591.2

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    C0LGT1, Q8RWK7, Q9LFT7
    UniProtKB/TrEMBL
    A0A178UBX0
    Conserved Domains (3) summary
    PLN00113
    Location:7 → 162
    PLN00113; leucine-rich repeat receptor-like protein kinase; Provisional
    sd00033
    Location:96 → 119
    LRR_RI; leucine-rich repeat [structural motif]
    cl21453
    Location:296 → 566
    PKc_like; Protein Kinases, catalytic domain

  2. NM_001343098.1 → NP_001330624.1  leucine-rich repeat transmembrane protein kinase family protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    C0LGT1, Q8RWK7, Q9LFT7
    UniProtKB/TrEMBL
    A0A178UBX0
    Conserved Domains (3) summary
    PLN00113
    Location:7 → 162
    PLN00113; leucine-rich repeat receptor-like protein kinase; Provisional
    sd00033
    Location:96 → 119
    LRR_RI; leucine-rich repeat [structural motif]
    cl21453
    Location:296 → 566
    PKc_like; Protein Kinases, catalytic domain
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
C0LGT1.1

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