U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

BXL3 beta-xylosidase 3 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 830833, updated on 18-Sep-2024

Summary

Go to the top of the page Help
Official Symbol
BXL3
Official Full Name
beta-xylosidase 3
Primary source
TAIR:AT5G09730
Locus tag
AT5G09730
See related
Araport:AT5G09730
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
ATBX3; ATBXL3; beta-xylosidase 3; BETA-XYLOSIDASE 3; BX3; F17I14.80; F17I14_80; XYL3
Summary
Encodes a protein similar to a beta-xylosidase located in the extracellular matrix. It is able to degrade terminal arabinosyl residues and likely participates in the in-vivo hydrolysis of arabinan. This is a member of glycosyl hydrolase family 3 and has six other closely related members.
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See BXL3 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
6
Sequence:
Chromosome: 5; NC_003076.8 (3014894..3018342, complement)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene miscRNA Neighboring gene uncharacterized protein Neighboring gene Magnesium transporter CorA-like family protein Neighboring gene histone acetyltransferase of the MYST family 2 Neighboring gene basic helix-loop-helix (bHLH) DNA-binding superfamily protein

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Purification, functional characterization, cloning, and identification of mutants of a seed-specific arabinan hydrolase in Arabidopsis. Minic Z, et al. J Exp Bot, 2006. PMID 16798843
  2. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. able to degrade all terminal arabinosyl residues; specifically expressed in the seed endosperm at the globular stage of the embryo
    Title: Purification, functional characterization, cloning, and identification of mutants of a seed-specific arabinan hydrolase in Arabidopsis.
Submit: New GeneRIF Correction

General gene information

Go to the top of the page Help
NM_121010.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables alpha-L-arabinofuranosidase activity IDA
Inferred from Direct Assay
more info
 PubMed 
enables xylan 1,4-beta-xylosidase activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within arabinan catabolic process IDA
Inferred from Direct Assay
more info
 PubMed 
involved_in xylan catabolic process IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in extracellular region ISM
Inferred from Sequence Model
more info
  

General protein information

Go to the top of the page Help
Preferred Names
beta-xylosidase 3
NP_196535.1
  • beta-xylosidase 3 (BXL3); FUNCTIONS IN: hydrolase activity, hydrolyzing O-glycosyl compounds; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 3, N-terminal (InterPro:IPR001764), Glycoside hydrolase, family 3, C-terminal (InterPro:IPR002772), Glycoside hydrolase, catalytic core (InterPro:IPR017853); BEST Arabidopsis thaliana protein match is: beta-D-xylosidase 4 (TAIR:AT5G64570.1); Has 9260 Blast hits to 8072 proteins in 1198 species: Archae - 63; Bacteria - 5600; Metazoa - 16; Fungi - 1569; Plants - 515; Viruses - 0; Other Eukaryotes - 1497 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    3014894..3018342 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_121010.3 → NP_196535.1  beta-xylosidase 3 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_196535.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q56WQ6, Q9LXD6
    UniProtKB/TrEMBL
    A0A178UFW8, A0A5S9Y2S1, A0A7G2F6Q1
    Conserved Domains (3) summary
    PLN03080
    Location:1 → 773
    PLN03080; Probable beta-xylosidase; Provisional
    pfam14310
    Location:697 → 764
    Fn3-like; Fibronectin type III-like domain
    cl07971
    Location:60 → 359
    Glyco_hydro_3; Glycosyl hydrolase family 3 N terminal domain
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9LXD6.1

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials
Tools