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EAP30/Vps36 family protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 830374, updated on 18-Sep-2024

Summary

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Official Full Name
EAP30/Vps36 family protein
Primary source
TAIR:AT5G04920
Locus tag
AT5G04920
See related
Araport:AT5G04920
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
MUG13.23; MUG13_23; VPS36
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Genomic context

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Location:
chromosome: 5
Exon count:
9
Sequence:
Chromosome: 5; NC_003076.8 (1438959..1442017, complement)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene DEA(D/H)-box RNA helicase family protein Neighboring gene NYC1-like protein Neighboring gene DNA repair REX1-B protein Neighboring gene aminophospholipid ATPase 1 Neighboring gene Pol-like polyprotein/retrotransposon

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. VPS36-Dependent Multivesicular Bodies Are Critical for Plasmamembrane Protein Turnover and Vacuolar Biogenesis. Wang HJ, et al. Plant Physiol, 2017 Jan. PMID 27879389, Free PMC Article
  2. The Arabidopsis ESCRT protein-protein interaction network. Shahriari M, et al. Plant Mol Biol, 2011 May. PMID 21442383
  3. The Arabidopsis elch mutant reveals functions of an ESCRT component in cytokinesis. Spitzer C, et al. Development, 2006 Dec. PMID 17090720
  4. Protein-Protein Interaction Network and Subcellular Localization of the Arabidopsis Thaliana ESCRT Machinery. Richardson LG, et al. Front Plant Sci, 2011. PMID 22639582, Free PMC Article
  5. Exploring the ESCRTing machinery in eukaryotes. Winter V, et al. Trends Plant Sci, 2006 Mar. PMID 16488176, Free PMC Article

See all (7) citations in PubMed

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. VPS36 is essential for a proper endosomal sorting pathway and for vacuolar biogenesis in Arabidopsis.
    Title: VPS36-Dependent Multivesicular Bodies Are Critical for Plasmamembrane Protein Turnover and Vacuolar Biogenesis.
Submit: New GeneRIF Correction

Pathways from PubChem

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Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

NM_120574.5

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables phosphatidylinositol-3-phosphate binding IEA
Inferred from Electronic Annotation
more info
  
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
enables ubiquitin binding IDA
Inferred from Direct Assay
more info
 PubMed 
Process Evidence Code Pubs
acts_upstream_of_or_within embryo development ending in seed dormancy IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in endosome transport via multivesicular body sorting pathway IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within multivesicular body sorting pathway IMP
Inferred from Mutant Phenotype
more info
 PubMed 
acts_upstream_of_or_within seedling development IMP
Inferred from Mutant Phenotype
more info
 PubMed 
acts_upstream_of_or_within vacuole organization IMP
Inferred from Mutant Phenotype
more info
 PubMed 
acts_upstream_of_or_within vesicle-mediated transport ISS
Inferred from Sequence or Structural Similarity
more info
 PubMed 
Component Evidence Code Pubs
part_of ESCRT II complex ISS
Inferred from Sequence or Structural Similarity
more info
 PubMed 
located_in chloroplast ISM
Inferred from Sequence Model
more info
  
located_in early endosome IDA
Inferred from Direct Assay
more info
 PubMed 
located_in late endosome IDA
Inferred from Direct Assay
more info
 PubMed 
located_in plasma membrane IDA
Inferred from Direct Assay
more info
 PubMed 

General protein information

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Preferred Names
EAP30/Vps36 family protein
NP_196112.1
  • EAP30/Vps36 family protein; CONTAINS InterPro DOMAIN/s: EAP30 (InterPro:IPR007286), Vacuolar protein sorting protein, Vps36 (InterPro:IPR021648); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    1438959..1442017 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_120574.5 → NP_196112.1  EAP30/Vps36 family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_196112.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q0WQI2, Q9FF81
    UniProtKB/TrEMBL
    A0A178U8Z1, A0A5S9Y2A8
    Conserved Domains (2) summary
    pfam04157
    Location:174 → 398
    EAP30; EAP30/Vps36 family
    pfam11605
    Location:18 → 111
    Vps36_ESCRT-II; Vacuolar protein sorting protein 36 Vps36
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9FF81.1

Gene LinkOut

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