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CPK26 calcium-dependent protein kinase 26 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 829980, updated on 18-Sep-2024

Summary

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Official Symbol
CPK26
Official Full Name
calcium-dependent protein kinase 26
Primary source
TAIR:AT4G38230
Locus tag
AT4G38230
See related
Araport:AT4G38230
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
ARABIDOPSIS THALIANA CALCIUM-DEPENDENT PROTEIN KINASE 26; ATCPK26; calcium-dependent protein kinase 26; F20D10.350; F20D10_350
Summary
member of Calcium Dependent Protein Kinase
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Genomic context

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See CPK26 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
12
Sequence:
Chromosome: 4; NC_003075.7 (17928677..17931511, complement)

Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene tubulin-tyrosine ligase Neighboring gene Peptidase M20/M25/M40 family protein Neighboring gene glycerol kinase Neighboring gene alpha-1,3-mannosyl-glycoprotein beta-1,2-N-acetylglucosaminyltransferase Neighboring gene Transmembrane amino acid transporter family protein Neighboring gene ncRNA Neighboring gene transport/golgi organization-like protein (DUF833)

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003075.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Advanced proteomic analyses yield a deep catalog of ubiquitylation targets in Arabidopsis. Kim DY, et al. Plant Cell, 2013 May. PMID 23667124, Free PMC Article
  2. Border control--a membrane-linked interactome of Arabidopsis. Jones AM, et al. Science, 2014 May 16. PMID 24833385
  3. Evidence for network evolution in an Arabidopsis interactome map. Arabidopsis Interactome Mapping Consortium. Science, 2011 Jul 29. PMID 21798944, Free PMC Article
  4. Global Analysis of Membrane-associated Protein Oligomerization Using Protein Correlation Profiling. McBride Z, et al. Mol Cell Proteomics, 2017 Nov. PMID 28887381, Free PMC Article
  5. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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NM_001204020.2
NM_001342486.1

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
  
enables protein kinase activity IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in plasma membrane HDA PubMed 
located_in plasma membrane ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
calcium-dependent protein kinase 26
NP_001190949.1
  • calcium-dependent protein kinase 26 (CPK26); FUNCTIONS IN: in 6 functions; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), EF-Hand 1, calcium-binding site (InterPro:IPR018247), Serine/threonine-protein kinase domain (InterPro:IPR002290), Calcium-binding EF-hand (InterPro:IPR002048), EF-hand-like domain (InterPro:IPR011992), EF-hand (InterPro:IPR018248), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase, catalytic domain (InterPro:IPR000719), EF-HAND 2 (InterPro:IPR018249), Calcium-dependent protein kinase (InterPro:IPR020642), Calcium/calmodulin-dependent protein kinase-like (InterPro:IPR020636), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635); BEST Arabidopsis thaliana protein match is: Calcium-dependent protein kinase family protein (TAIR:AT2G17290.1).
NP_001190950.1
  • calcium-dependent protein kinase 26 (CPK26); FUNCTIONS IN: in 6 functions; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), EF-Hand 1, calcium-binding site (InterPro:IPR018247), Serine/threonine-protein kinase domain (InterPro:IPR002290), Calcium-binding EF-hand (InterPro:IPR002048), EF-hand-like domain (InterPro:IPR011992), EF-hand (InterPro:IPR018248), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase, catalytic domain (InterPro:IPR000719), EF-HAND 2 (InterPro:IPR018249), Calcium-dependent protein kinase (InterPro:IPR020642), Calcium/calmodulin-dependent protein kinase-like (InterPro:IPR020636), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635); BEST Arabidopsis thaliana protein match is: Calcium-dependent protein kinase family protein (TAIR:AT2G17290.1).
NP_195536.2
  • calcium-dependent protein kinase 26 (CPK26); FUNCTIONS IN: calmodulin-dependent protein kinase activity, protein kinase activity, kinase activity, calcium ion binding, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: EF-Hand 1, calcium-binding site (InterPro:IPR018247), EF-hand-like domain (InterPro:IPR011992), Calcium-binding EF-hand (InterPro:IPR002048), EF-hand (InterPro:IPR018248), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Protein kinase, catalytic domain (InterPro:IPR000719), EF-HAND 2 (InterPro:IPR018249), Calcium-dependent protein kinase (InterPro:IPR020642), Calcium/calmodulin-dependent protein kinase-like (InterPro:IPR020636); BEST Arabidopsis thaliana protein match is: Calcium-dependent protein kinase family protein (TAIR:AT2G17290.1); Has 94022 Blast hits to 87051 proteins in 3195 species: Archae - 49; Bacteria - 6802; Metazoa - 37554; Fungi - 14737; Plants - 17453; Viruses - 106; Other Eukaryotes - 17321 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003075.7 Reference assembly

    Range
    17928677..17931511 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_119985.2 → NP_195536.2  calcium-dependent protein kinase 26 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_195536.2

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9SZM3
    Conserved Domains (3) summary
    PTZ00184
    Location:174 → 316
    PTZ00184; calmodulin; Provisional
    cd00051
    Location:257 → 317
    EFh; EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to ...
    cl21453
    Location:1 → 137
    PKc_like; Protein Kinases, catalytic domain

  2. NM_001204021.1 → NP_001190950.1  calcium-dependent protein kinase 26 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001190950.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q058J0, Q9SZM3
    UniProtKB/TrEMBL
    A0A178V0I0, A0A654FWM9
    Conserved Domains (2) summary
    COG5126
    Location:322 → 460
    FRQ1; Ca2+-binding protein, EF-hand superfamily [Signal transduction mechanisms]
    cd05117
    Location:24 → 281
    STKc_CAMK; The catalytic domain of CAMK family Serine/Threonine Kinases

  3. NM_001204020.2 → NP_001190949.1  calcium-dependent protein kinase 26 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001190949.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A5S9Y052, F4JTL3
    Conserved Domains (4) summary
    PTZ00184
    Location:348 → 490
    PTZ00184; calmodulin; Provisional
    cd00051
    Location:431 → 491
    EFh; EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to ...
    cd05117
    Location:54 → 311
    STKc_CAMK; The catalytic domain of CAMK family Serine/Threonine Kinases
    pfam00069
    Location:54 → 312
    Pkinase; Protein kinase domain

  4. NM_001342486.1 → NP_001328909.1  calcium-dependent protein kinase 26 [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q058J0, Q9SZM3
    UniProtKB/TrEMBL
    A0A178V0I0, A0A654FWM9
    Conserved Domains (2) summary
    COG5126
    Location:322 → 460
    FRQ1; Ca2+-binding protein, EF-hand superfamily [Signal transduction mechanisms]
    cd05117
    Location:24 → 281
    STKc_CAMK; The catalytic domain of CAMK family Serine/Threonine Kinases
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9SZM3.1

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