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[ Arabidopsis thaliana (thale cress) ]

Gene ID: 829971, updated on 22-Aug-2024

Summary

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Primary source
Araport:AT4G38150
Locus tag
AT4G38150
See related
TAIR:AT4G38150
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F20D10.270; F20D10_270
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Genomic context

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Location:
chromosome: 4
Exon count:
2
Sequence:
Chromosome: 4; NC_003075.7 (17900570..17902282, complement)

Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene histone deacetylase 1 Neighboring gene RING/U-box superfamily protein Neighboring gene Mitochondrial transcription termination factor family protein Neighboring gene FAR1-related sequence 9 Neighboring gene FAR1-related sequence 5 Neighboring gene ncRNA

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003075.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Evidence for network evolution in an Arabidopsis interactome map. Arabidopsis Interactome Mapping Consortium. Science, 2011 Jul 29. PMID 21798944, Free PMC Article
  2. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

  • At4g38160_Arabidopsis_lyrata_ssp._lyrata_CAN1 (e-PCR)
  • At4g38160_Arabidopsis_lyrata_ssp._petraea_GER1 (e-PCR)

Homology

NM_001036729.1
NM_001342482.1
NM_119976.5

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in mitochondrion ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
Pentatricopeptide repeat (PPR) superfamily protein
NP_001031806.1
  • Pentatricopeptide repeat (PPR) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT5G03560.2); Has 35233 Blast hits to 8000 proteins in 207 species: Archae - 4; Bacteria - 10; Metazoa - 48; Fungi - 167; Plants - 34530; Viruses - 0; Other Eukaryotes - 474 (source: NCBI BLink).
NP_001320158.1
  • Pentatricopeptide repeat (PPR) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT5G03560.2); Has 35233 Blast hits to 8000 proteins in 207 species: Archae - 4; Bacteria - 10; Metazoa - 48; Fungi - 167; Plants - 34530; Viruses - 0; Other Eukaryotes - 474 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003075.7 Reference assembly

    Range
    17900570..17902282 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001342482.1 → NP_001320158.1  Pentatricopeptide repeat (PPR) superfamily protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q8S9H9, Q9SZL5
    UniProtKB/TrEMBL
    A0A654FWM0, A0A7G2F4A7
    Conserved Domains (3) summary
    PLN03081
    Location:155 → 292
    PLN03081; pentatricopeptide (PPR) repeat-containing protein; Provisional
    sd00004
    Location:136 → 160
    PPR; PPR repeat [structural motif]
    pfam13041
    Location:164 → 211
    PPR_2; PPR repeat family

  2. NM_119976.5 → NP_195528.1  Pentatricopeptide repeat (PPR) superfamily protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_195528.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q8S9H9, Q9SZL5
    UniProtKB/TrEMBL
    A0A654FWM0, A0A7G2F4A7
    Conserved Domains (3) summary
    PLN03081
    Location:155 → 292
    PLN03081; pentatricopeptide (PPR) repeat-containing protein; Provisional
    sd00004
    Location:136 → 160
    PPR; PPR repeat [structural motif]
    pfam13041
    Location:164 → 211
    PPR_2; PPR repeat family

  3. NM_001036729.1 → NP_001031806.1  Pentatricopeptide repeat (PPR) superfamily protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001031806.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q8S9H9, Q9SZL5
    UniProtKB/TrEMBL
    A0A654FWM0, A0A7G2F4A7
    Conserved Domains (3) summary
    PLN03081
    Location:155 → 292
    PLN03081; pentatricopeptide (PPR) repeat-containing protein; Provisional
    sd00004
    Location:136 → 160
    PPR; PPR repeat [structural motif]
    pfam13041
    Location:164 → 211
    PPR_2; PPR repeat family
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9SZL5.1

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