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AGF1 AT-hook protein of GA feedback 1 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 829692, updated on 18-Sep-2024

Summary

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Official Symbol
AGF1
Official Full Name
AT-hook protein of GA feedback 1
Primary source
TAIR:AT4G35390
Locus tag
AT4G35390
See related
Araport:AT4G35390
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
AHL25; AT-hook motif nuclear localized protein 25; AT-hook protein of GA feedback 1; F23E12.50; F23E12_50
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Genomic context

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See AGF1 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
1
Sequence:
Chromosome: 4; NC_003075.7 (16829326..16830692)

Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene SEC7-like guanine nucleotide exchange family protein Neighboring gene miscRNA Neighboring gene pseudo Neighboring gene Clathrin adaptor complex small chain family protein Neighboring gene dihydroflavonol 4-reductase-like1

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003075.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. AGF1, an AT-hook protein, is necessary for the negative feedback of AtGA3ox1 encoding GA 3-oxidase. Matsushita A, et al. Plant Physiol, 2007 Mar. PMID 17277098, Free PMC Article
  2. Arabidopsis thaliana AHL family modulates hypocotyl growth redundantly by interacting with each other via the PPC/DUF296 domain. Zhao J, et al. Proc Natl Acad Sci U S A, 2013 Nov 26. PMID 24218605, Free PMC Article
  3. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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NM_119705.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables DNA-binding transcription factor activity IDA
Inferred from Direct Assay
more info
 PubMed 
enables minor groove of adenine-thymine-rich DNA binding IEA
Inferred from Electronic Annotation
more info
  
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
Process Evidence Code Pubs
acts_upstream_of_or_within negative regulation of gibberellic acid mediated signaling pathway IEP
Inferred from Expression Pattern
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IDA
Inferred from Direct Assay
more info
 PubMed 

General protein information

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Preferred Names
AT-hook protein of GA feedback 1
NP_195265.2
  • AT-hook protein of GA feedback 1 (AGF1); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF296 (InterPro:IPR005175), Predicted AT-hook DNA-binding (InterPro:IPR014476); BEST Arabidopsis thaliana protein match is: Predicted AT-hook DNA-binding family protein (TAIR:AT1G76500.1); Has 970 Blast hits to 959 proteins in 100 species: Archae - 2; Bacteria - 77; Metazoa - 47; Fungi - 10; Plants - 766; Viruses - 3; Other Eukaryotes - 65 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003075.7 Reference assembly

    Range
    16829326..16830692
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_119705.3 → NP_195265.2  AT-hook protein of GA feedback 1 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_195265.2

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    O65489, Q6DBQ1
    UniProtKB/TrEMBL
    A0A5S9XZJ3, A0A654FVR5
    Conserved Domains (1) summary
    pfam03479
    Location:93 → 206
    DUF296; Domain of unknown function (DUF296)
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q6DBQ1.1

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