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Alkaline-phosphatase-like family protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 829091, updated on 18-Sep-2024

Summary

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Official Full Name
Alkaline-phosphatase-like family protein
Primary source
TAIR:AT4G29700
Locus tag
AT4G29700
See related
Araport:AT4G29700
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
T16L4.210; T16L4_210
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Genomic context

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Location:
chromosome: 4
Exon count:
1
Sequence:
Chromosome: 4; NC_003075.7 (14543138..14545310, complement)

Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene Alkaline-phosphatase-like family protein Neighboring gene Alkaline-phosphatase-like family protein Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene Alkaline-phosphatase-like family protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003075.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The vegetative vacuole proteome of Arabidopsis thaliana reveals predicted and unexpected proteins. Carter C, et al. Plant Cell, 2004 Dec. PMID 15539469, Free PMC Article
  2. Extensive signal integration by the phytohormone protein network. Altmann M, et al. Nature, 2020 Jul. PMID 32612234
  3. A Pan-plant Protein Complex Map Reveals Deep Conservation and Novel Assemblies. McWhite CD, et al. Cell, 2020 Apr 16. PMID 32191846, Free PMC Article
  4. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

NM_119115.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables nucleoside triphosphate diphosphatase activity IEA
Inferred from Electronic Annotation
more info
  
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
Component Evidence Code Pubs
located_in extracellular region ISM
Inferred from Sequence Model
more info
  
located_in plant-type vacuole HDA PubMed 

General protein information

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Preferred Names
Alkaline-phosphatase-like family protein
NP_194699.1
  • Alkaline-phosphatase-like family protein; FUNCTIONS IN: hydrolase activity, catalytic activity; INVOLVED IN: metabolic process, nucleotide metabolic process; LOCATED IN: vacuole; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Alkaline phosphatase-like, alpha/beta/alpha (InterPro:IPR017849), Type I phosphodiesterase/nucleotide pyrophosphatase/phosphate transferase (InterPro:IPR002591), Alkaline-phosphatase-like, core domain (InterPro:IPR017850); BEST Arabidopsis thaliana protein match is: Alkaline-phosphatase-like family protein (TAIR:AT4G29690.1); Has 2237 Blast hits to 2218 proteins in 571 species: Archae - 24; Bacteria - 916; Metazoa - 704; Fungi - 177; Plants - 108; Viruses - 6; Other Eukaryotes - 302 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003075.7 Reference assembly

    Range
    14543138..14545310 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_119115.3 → NP_194699.1  Alkaline-phosphatase-like family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_194699.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178UYH6, A0A5S9XXF0, A0A654FU29, Q9SU81
    Conserved Domains (1) summary
    pfam01663
    Location:60 → 394
    Phosphodiest; Type I phosphodiesterase / nucleotide pyrophosphatase
Nucleotide Protein
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