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LOC8288176 probable galacturonosyltransferase 4 [ Ricinus communis (castor bean) ]

Gene ID: 8288176, updated on 30-Nov-2023

Summary

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Gene symbol
LOC8288176
Gene description
probable galacturonosyltransferase 4
Locus tag
RCOM_0820390
Gene type
protein coding
RefSeq status
MODEL
Organism
Ricinus communis
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
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Genomic context

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See LOC8288176 in Genome Data Viewer
Location:
chromosome: 10
Exon count:
9
Annotation release Status Assembly Chr Location
102 current ASM1957865v1 (GCF_019578655.1) 10 NC_063265.1 (14107072..14111133, complement)
101 previous assembly JCVI_RCG_1.1 (GCF_000151685.1) Unplaced Scaffold NW_002994459.1 (316629..320858)

Chromosome 10 - NC_063265.1Genomic Context describing neighboring genes Neighboring gene probable E3 ubiquitin-protein ligase EDA40 Neighboring gene uncharacterized LOC125371356 Neighboring gene cell wall / vacuolar inhibitor of fructosidase 2 Neighboring gene putative disease resistance protein At1g50180 Neighboring gene uncharacterized LOC8283869 Neighboring gene pentatricopeptide repeat-containing protein At3g24000, mitochondrial

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables polygalacturonate 4-alpha-galacturonosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable galacturonosyltransferase 4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Ricinus communis Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1957865v1

Genomic

  1. NC_063265.1 Reference ASM1957865v1

    Range
    14107072..14111133 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015723018.3 → XP_015578504.1  probable galacturonosyltransferase 4 isoform X2

    Conserved Domains (2) summary
    cd06429
    Location:325 → 619
    GT8_like_1; GT8_like_1 represents a subfamily of GT8 with unknown function
    PLN02829
    Location:1 → 632
    PLN02829; Probable galacturonosyltransferase

  2. XM_002525183.4 → XP_002525229.1  probable galacturonosyltransferase 4 isoform X1

    See identical proteins and their annotated locations for XP_002525229.1

    UniProtKB/TrEMBL
    B9SGW0
    Conserved Domains (2) summary
    cd06429
    Location:340 → 634
    GT8_like_1; GT8_like_1 represents a subfamily of GT8 with unknown function
    PLN02829
    Location:1 → 647
    PLN02829; Probable galacturonosyltransferase
Nucleotide Protein
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