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Class II aminoacyl-tRNA and biotin synthetases superfamily protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 828794, updated on 18-Sep-2024

Summary

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Official Full Name
Class II aminoacyl-tRNA and biotin synthetases superfamily protein
Primary source
TAIR:AT4G26870
Locus tag
AT4G26870
See related
Araport:AT4G26870
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F10M23.210; F10M23_210
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Genomic context

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Location:
chromosome: 4
Exon count:
9
Sequence:
Chromosome: 4; NC_003075.7 (13505291..13507870)

Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene GDP-L-galactose phosphorylase 1 Neighboring gene Putative pyridoxal phosphate-dependent enzyme, YBL036C type Neighboring gene Stigma-specific Stig1 family protein Neighboring gene ncRNA

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003075.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Targeted interactomics reveals a complex core cell cycle machinery in Arabidopsis thaliana. Van Leene J, et al. Mol Syst Biol, 2010 Aug 10. PMID 20706207, Free PMC Article
  2. Arabidopsis plasmodesmal proteome. Fernandez-Calvino L, et al. PLoS One, 2011 Apr 20. PMID 21533090, Free PMC Article
  3. Advanced proteomic analyses yield a deep catalog of ubiquitylation targets in Arabidopsis. Kim DY, et al. Plant Cell, 2013 May. PMID 23667124, Free PMC Article
  4. A Pan-plant Protein Complex Map Reveals Deep Conservation and Novel Assemblies. McWhite CD, et al. Cell, 2020 Apr 16. PMID 32191846, Free PMC Article
  5. Global Analysis of Membrane-associated Protein Oligomerization Using Protein Correlation Profiling. McBride Z, et al. Mol Cell Proteomics, 2017 Nov. PMID 28887381, Free PMC Article

See all (6) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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NM_118821.6

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables aspartate-tRNA ligase activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in aspartyl-tRNA aminoacylation IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in cytoplasm ISM
Inferred from Sequence Model
more info
  
located_in cytosol HDA PubMed 
located_in plasmodesma HDA PubMed 

General protein information

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Preferred Names
Class II aminoacyl-tRNA and biotin synthetases superfamily protein
NP_194417.2
  • Class II aminoacyl-tRNA and biotin synthetases superfamily protein; FUNCTIONS IN: aspartate-tRNA ligase activity, nucleotide binding, aminoacyl-tRNA ligase activity, nucleic acid binding, ATP binding; INVOLVED IN: response to cadmium ion, tRNA aminoacylation for protein translation; LOCATED IN: cytoplasm; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aspartyl-tRNA synthetase, class IIb, archea/euk type (InterPro:IPR004523), Nucleic acid-binding, OB-fold (InterPro:IPR012340), Nucleic acid binding, OB-fold, tRNA/helicase-type (InterPro:IPR004365), Aminoacyl-tRNA synthetase, class II, conserved domain (InterPro:IPR006195), Aspartyl/Asparaginyl-tRNA synthetase, class IIb (InterPro:IPR002312), Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Aminoacyl-tRNA synthetase, class II (D/K/N) (InterPro:IPR004364), Aminoacyl-tRNA synthetase, class II (D/K/N)-like (InterPro:IPR018150); BEST Arabidopsis thaliana protein match is: Class II aminoacyl-tRNA and biotin synthetases superfamily protein (TAIR:AT4G31180.2); Has 28683 Blast hits to 22852 proteins in 2993 species: Archae - 454; Bacteria - 19619; Metazoa - 777; Fungi - 1015; Plants - 410; Viruses - 0; Other Eukaryotes - 6408 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003075.7 Reference assembly

    Range
    13505291..13507870
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_118821.6 → NP_194417.2  Class II aminoacyl-tRNA and biotin synthetases superfamily protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_194417.2

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q8H104, Q9SZ27
    UniProtKB/TrEMBL
    A0A5S9XYB7, A0A7G2F175
    Conserved Domains (1) summary
    PLN02850
    Location:2 → 532
    PLN02850; aspartate-tRNA ligase
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q8H104.1

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