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BGAL12 beta-galactosidase 12 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 828720, updated on 18-Sep-2024

Summary

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Official Symbol
BGAL12
Official Full Name
beta-galactosidase 12
Primary source
TAIR:AT4G26140
Locus tag
AT4G26140
See related
Araport:AT4G26140
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
beta-galactosidase 12; F20B18.250; F20B18_250
Summary
putative beta-galactosidase
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Genomic context

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See BGAL12 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
16
Sequence:
Chromosome: 4; NC_003075.7 (13242968..13248213, complement)

Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene Ankyrin repeat family protein / BTB/POZ domain-containing protein Neighboring gene cotton fiber protein Neighboring gene uncharacterized protein Neighboring gene ncRNA Neighboring gene ncRNA

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003075.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Comparative characterization of the Arabidopsis subfamily a1 beta-galactosidases. Gantulga D, et al. Phytochemistry, 2009 Dec. PMID 19767039
  2. Subcellular location of Arabidopsis thaliana subfamily a1 β-galactosidases and developmental regulation of transcript levels of their coding genes. Moneo-Sánchez M, et al. Plant Physiol Biochem, 2016 Dec. PMID 27676245
  3. A Pan-plant Protein Complex Map Reveals Deep Conservation and Novel Assemblies. McWhite CD, et al. Cell, 2020 Apr 16. PMID 32191846, Free PMC Article
  4. Global Analysis of Membrane-associated Protein Oligomerization Using Protein Correlation Profiling. McBride Z, et al. Mol Cell Proteomics, 2017 Nov. PMID 28887381, Free PMC Article
  5. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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NM_001341777.1
NM_001341778.1
NM_001341779.1
NM_001341780.1
NM_001341781.1
NM_001341782.1
NM_001341783.1
NM_118747.3
NM_179222.2

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables beta-galactosidase activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in cytosol HDA PubMed 
located_in extracellular region ISM
Inferred from Sequence Model
more info
  
located_in plant-type cell wall IDA
Inferred from Direct Assay
more info
 PubMed 

General protein information

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Preferred Names
beta-galactosidase 12
NP_194344.2
  • beta-galactosidase 12 (BGAL12); FUNCTIONS IN: cation binding, beta-galactosidase activity, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: cell wall; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 35, conserved site (InterPro:IPR019801), Glycoside hydrolase family 2, carbohydrate-binding (InterPro:IPR006104), Glycoside hydrolase, family 35 (InterPro:IPR001944), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781), Galactose-binding domain-like (InterPro:IPR008979); BEST Arabidopsis thaliana protein match is: beta-galactosidase 2 (TAIR:AT3G52840.1); Has 2056 Blast hits to 2037 proteins in 472 species: Archae - 15; Bacteria - 846; Metazoa - 355; Fungi - 209; Plants - 564; Viruses - 0; Other Eukaryotes - 67 (source: NCBI BLink).
NP_849553.1
  • beta-galactosidase 12 (BGAL12); FUNCTIONS IN: cation binding, beta-galactosidase activity, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: lactose catabolic process, using glucoside 3-dehydrogenase, carbohydrate metabolic process, lactose catabolic process via UDP-galactose, lactose catabolic process; LOCATED IN: cell wall; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 35, conserved site (InterPro:IPR019801), Glycoside hydrolase family 2, carbohydrate-binding (InterPro:IPR006104), Glycoside hydrolase, family 35 (InterPro:IPR001944), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781), Galactose-binding domain-like (InterPro:IPR008979); BEST Arabidopsis thaliana protein match is: beta-galactosidase 2 (TAIR:AT3G52840.1); Has 2223 Blast hits to 2064 proteins in 473 species: Archae - 15; Bacteria - 965; Metazoa - 380; Fungi - 213; Plants - 581; Viruses - 0; Other Eukaryotes - 69 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003075.7 Reference assembly

    Range
    13242968..13248213 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_118747.3 → NP_194344.2  beta-galactosidase 12 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_194344.2

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A5S9XVZ1
    Conserved Domains (2) summary
    PLN03059
    Location:11 → 621
    PLN03059; beta-galactosidase; Provisional
    pfam01301
    Location:37 → 338
    Glyco_hydro_35; Glycosyl hydrolases family 35

  2. NM_001341777.1 → NP_001329560.1  beta-galactosidase 12 [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A5S9XVZ1

  3. NM_179222.2 → NP_849553.1  beta-galactosidase 12 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_849553.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q8LPL0, Q9SCV0, Q9SZI5
    UniProtKB/TrEMBL
    A0A5S9XVZ1, A0A654FSX5
    Conserved Domains (1) summary
    PLN03059
    Location:11 → 726
    PLN03059; beta-galactosidase; Provisional

  4. NM_001341780.1 → NP_001329558.1  beta-galactosidase 12 [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8B834, A0A5S9XVZ1

  5. NM_001341781.1 → NP_001329559.1  beta-galactosidase 12 [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8B849, A0A5S9XVZ1

  6. NM_001341779.1 → NP_001329557.1  beta-galactosidase 12 [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178V7E8, A0A1P8B827

  7. NM_001341778.1 → NP_001329554.1  beta-galactosidase 12 [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178V7E8, A0A1P8B827

  8. NM_001341782.1 → NP_001329555.1  beta-galactosidase 12 [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178V7E8, A0A1P8B828

  9. NM_001341783.1 → NP_001329556.1  beta-galactosidase 12 [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8B829, A0A5S9XVZ1
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9SCV0.1

Gene LinkOut

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