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Riboflavin synthase-like superfamily protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 828612, updated on 18-Sep-2024

Summary

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Official Full Name
Riboflavin synthase-like superfamily protein
Primary source
TAIR:AT4G25090
Locus tag
AT4G25090
See related
Araport:AT4G25090
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F24A6.3
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Genomic context

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Location:
chromosome: 4
Exon count:
11
Sequence:
Chromosome: 4; NC_003075.7 (12878667..12883805, complement)

Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene acyl carrier protein 4 Neighboring gene caldesmon-like protein Neighboring gene magnesium-protoporphyrin IX methyltransferase Neighboring gene Fe superoxide dismutase 1 Neighboring gene metacaspase 2

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003075.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Production of reactive oxygen species by plant NADPH oxidases. Sagi M, et al. Plant Physiol, 2006 Jun. PMID 16760484, Free PMC Article
  2. High heterogeneity within the ribosomal proteins of the Arabidopsis thaliana 80S ribosome. Giavalisco P, et al. Plant Mol Biol, 2005 Mar. PMID 15821981
  3. The vegetative vacuole proteome of Arabidopsis thaliana reveals predicted and unexpected proteins. Carter C, et al. Plant Cell, 2004 Dec. PMID 15539469, Free PMC Article
  4. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198
  5. Multi-omics network-based functional annotation of unknown Arabidopsis genes. Depuydt T, et al. Plant J, 2021 Nov. PMID 34562334

GeneRIFs: Gene References Into Functions

General gene information

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Homology

NM_001203904.1

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
  
enables oxidoreductase activity, acting on NAD(P)H, oxygen as acceptor IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in cytosolic ribosome HDA PubMed 
located_in plant-type vacuole HDA PubMed 
located_in plasma membrane ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
Riboflavin synthase-like superfamily protein
NP_001190833.1
  • Riboflavin synthase-like superfamily protein; FUNCTIONS IN: in 7 functions; INVOLVED IN: oxidation reduction; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Ferredoxin reductase-type FAD-binding domain (InterPro:IPR017927), Cytochrome b245, heavy chain (InterPro:IPR000778), EF-Hand 1, calcium-binding site (InterPro:IPR018247), EF-hand-like domain (InterPro:IPR011992), Ferric reductase-like transmembrane component, N-terminal (InterPro:IPR013130), Ferric reductase, NAD binding (InterPro:IPR013121), NADPH oxidase Respiratory burst (InterPro:IPR013623), FAD-binding 8 (InterPro:IPR013112), EF-HAND 2 (InterPro:IPR018249), Riboflavin synthase-like beta-barrel (InterPro:IPR017938); BEST Arabidopsis thaliana protein match is: NADPH/respiratory burst oxidase protein D (TAIR:AT5G51060.1).
NP_194239.2
  • Riboflavin synthase-like superfamily protein; FUNCTIONS IN: in 7 functions; INVOLVED IN: oxidation reduction; LOCATED IN: cytosolic ribosome, vacuole; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Ferredoxin reductase-type FAD-binding domain (InterPro:IPR017927), Cytochrome b245, heavy chain (InterPro:IPR000778), EF-Hand 1, calcium-binding site (InterPro:IPR018247), EF-hand-like domain (InterPro:IPR011992), Ferric reductase-like transmembrane component, N-terminal (InterPro:IPR013130), Ferric reductase, NAD binding (InterPro:IPR013121), NADPH oxidase Respiratory burst (InterPro:IPR013623), EF-HAND 2 (InterPro:IPR018249), FAD-binding 8 (InterPro:IPR013112), Riboflavin synthase-like beta-barrel (InterPro:IPR017938); BEST Arabidopsis thaliana protein match is: NADPH/respiratory burst oxidase protein D (TAIR:AT5G51060.1); Has 2591 Blast hits to 2460 proteins in 416 species: Archae - 12; Bacteria - 368; Metazoa - 707; Fungi - 773; Plants - 526; Viruses - 0; Other Eukaryotes - 205 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003075.7 Reference assembly

    Range
    12878667..12883805 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_118641.3 → NP_194239.2  Riboflavin synthase-like superfamily protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_194239.2

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    F4JRU6, Q9SW17
    UniProtKB/TrEMBL
    A0A178UU44, A0A5S9XWB9, A0A654FSJ6
    Conserved Domains (5) summary
    cd06186
    Location:556 → 849
    NOX_Duox_like_FAD_NADP; NADPH oxidase (NOX) catalyzes the generation of reactive oxygen species (ROS) such as superoxide and hydrogen peroxide. ROS were originally identified as bactericidal agents in phagocytes, but are now also implicated in cell signaling and metabolism. NOX ...
    PLN02844
    Location:352 → 683
    PLN02844; oxidoreductase/ferric-chelate reductase
    pfam08030
    Location:661 → 832
    NAD_binding_6; Ferric reductase NAD binding domain
    pfam08414
    Location:81 → 179
    NADPH_Ox; Respiratory burst NADPH oxidase
    pfam13499
    Location:178 → 240
    EF-hand_7; EF-hand domain pair

  2. NM_001203904.1 → NP_001190833.1  Riboflavin synthase-like superfamily protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001190833.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178UU44, F4JRU7
    Conserved Domains (5) summary
    cd06186
    Location:544 → 837
    NOX_Duox_like_FAD_NADP; NADPH oxidase (NOX) catalyzes the generation of reactive oxygen species (ROS) such as superoxide and hydrogen peroxide. ROS were originally identified as bactericidal agents in phagocytes, but are now also implicated in cell signaling and metabolism. NOX ...
    cd00051
    Location:185 → 240
    EFh; EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to ...
    pfam01794
    Location:338 → 489
    Ferric_reduct; Ferric reductase like transmembrane component
    pfam08030
    Location:649 → 819
    NAD_binding_6; Ferric reductase NAD binding domain
    pfam08414
    Location:84 → 178
    NADPH_Ox; Respiratory burst NADPH oxidase
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9SW17.2

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