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LOC8285565 mannosylglycoprotein endo-beta-mannosidase [ Ricinus communis (castor bean) ]

Gene ID: 8285565, updated on 30-Nov-2023

Summary

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Gene symbol
LOC8285565
Gene description
mannosylglycoprotein endo-beta-mannosidase
Locus tag
RCOM_1431510
Gene type
protein coding
RefSeq status
MODEL
Organism
Ricinus communis
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
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Genomic context

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See LOC8285565 in Genome Data Viewer
Location:
chromosome: 10
Exon count:
11
Annotation release Status Assembly Chr Location
102 current ASM1957865v1 (GCF_019578655.1) 10 NC_063265.1 (12212408..12218822, complement)
101 previous assembly JCVI_RCG_1.1 (GCF_000151685.1) Unplaced Scaffold NW_002994281.1 (952689..958951, complement)

Chromosome 10 - NC_063265.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC8285564 Neighboring gene pentatricopeptide repeat-containing protein At3g05340 Neighboring gene long chain acyl-CoA synthetase 7, peroxisomal Neighboring gene aminopeptidase P2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables hydrolase activity, hydrolyzing O-glycosyl compounds IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
mannosylglycoprotein endo-beta-mannosidase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Ricinus communis Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1957865v1

Genomic

  1. NC_063265.1 Reference ASM1957865v1

    Range
    12212408..12218822 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002512335.4 → XP_002512381.1  mannosylglycoprotein endo-beta-mannosidase

    See identical proteins and their annotated locations for XP_002512381.1

    UniProtKB/TrEMBL
    B9RF62
    Conserved Domains (4) summary
    COG3250
    Location:45 → 687
    LacZ; Beta-galactosidase/beta-glucuronidase [Carbohydrate transport and metabolism]
    pfam00703
    Location:209 → 328
    Glyco_hydro_2; Glycosyl hydrolases family 2
    pfam02837
    Location:86 → 152
    Glyco_hydro_2_N; Glycosyl hydrolases family 2, sugar binding domain
    cl23725
    Location:340 → 464
    Glyco_hydro_1; Glycosyl hydrolase family 1
Nucleotide Protein
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