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LOC8280137 arabinosyltransferase XEG113 [ Ricinus communis (castor bean) ]

Gene ID: 8280137, updated on 30-Nov-2023

Summary

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Gene symbol
LOC8280137
Gene description
arabinosyltransferase XEG113
Locus tag
RCOM_0867590
Gene type
protein coding
RefSeq status
MODEL
Organism
Ricinus communis
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
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Genomic context

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See LOC8280137 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
13
Annotation release Status Assembly Chr Location
102 current ASM1957865v1 (GCF_019578655.1) 5 NC_063260.1 (27858671..27869391)
101 previous assembly JCVI_RCG_1.1 (GCF_000151685.1) Unplaced Scaffold NW_002994348.1 (682891..693450, complement)

Chromosome 5 - NC_063260.1Genomic Context describing neighboring genes Neighboring gene AP-4 complex subunit epsilon Neighboring gene probable receptor-like protein kinase At1g49730 Neighboring gene glycine-rich protein A3-like Neighboring gene 22.0 kDa class IV heat shock protein-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables arabinosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell wall pectin biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein glycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
arabinosyltransferase XEG113

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Ricinus communis Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1957865v1

Genomic

  1. NC_063260.1 Reference ASM1957865v1

    Range
    27858671..27869391
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002519888.4 → XP_002519934.1  arabinosyltransferase XEG113

    See identical proteins and their annotated locations for XP_002519934.1

    UniProtKB/TrEMBL
    B9S1R9
    Conserved Domains (1) summary
    pfam03407
    Location:153 → 379
    Nucleotid_trans; Nucleotide-diphospho-sugar transferase
Nucleotide Protein
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