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LOC8278876 UDP-glucuronate:xylan alpha-glucuronosyltransferase 2 [ Ricinus communis (castor bean) ]

Gene ID: 8278876, updated on 30-Nov-2023

Summary

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Gene symbol
LOC8278876
Gene description
UDP-glucuronate:xylan alpha-glucuronosyltransferase 2
Locus tag
RCOM_1590700
Gene type
protein coding
RefSeq status
MODEL
Organism
Ricinus communis
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
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Genomic context

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See LOC8278876 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
3
Annotation release Status Assembly Chr Location
102 current ASM1957865v1 (GCF_019578655.1) 2 NC_063257.1 (3160474..3163583)
101 previous assembly JCVI_RCG_1.1 (GCF_000151685.1) Unplaced Scaffold NW_002994277.1 (1537528..1540891, complement)

Chromosome 2 - NC_063257.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC8278883 Neighboring gene protein TIC 22, chloroplastic Neighboring gene transfer RNA arginine (anticodon CCU) Neighboring gene protein WEAK CHLOROPLAST MOVEMENT UNDER BLUE LIGHT 1 Neighboring gene photosystem I chlorophyll a/b-binding protein 5, chloroplastic

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables glycosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in xylan biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
UDP-glucuronate:xylan alpha-glucuronosyltransferase 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Ricinus communis Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1957865v1

Genomic

  1. NC_063257.1 Reference ASM1957865v1

    Range
    3160474..3163583
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002510177.4 → XP_002510223.2  UDP-glucuronate:xylan alpha-glucuronosyltransferase 2 isoform X1

  2. XM_015717261.2 → XP_015572747.2  UDP-glucuronate:xylan alpha-glucuronosyltransferase 2 isoform X2

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases
Research Materials