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LpxD2 Trimeric LpxA-like enzymes superfamily protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 827871, updated on 18-Sep-2024

Summary

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Official Symbol
LpxD2
Official Full Name
Trimeric LpxA-like enzymes superfamily protein
Primary source
TAIR:AT4G21220
Locus tag
AT4G21220
See related
Araport:AT4G21220
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
AtLpxD2; F7J7.160; F7J7_160; lipid X D2
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Genomic context

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See LpxD2 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
10
Sequence:
Chromosome: 4; NC_003075.7 (11316828..11319137, complement)

Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein Neighboring gene cysteine-rich RLK (RECEPTOR-like protein kinase) 27 Neighboring gene F-box and associated interaction domains-containing protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003075.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Pathway for lipid A biosynthesis in Arabidopsis thaliana resembling that of Escherichia coli. Li C, et al. Proc Natl Acad Sci U S A, 2011 Jul 12. PMID 21709257, Free PMC Article
  2. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

GeneRIFs: Gene References Into Functions

General gene information

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NM_118241.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables N-acyltransferase activity IEA
Inferred from Electronic Annotation
more info
  
enables UDP-3-O-(R-3-hydroxymyristoyl)-glucosamine N-acyltransferase activity IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Process Evidence Code Pubs
acts_upstream_of_or_within lipid X metabolic process IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Component Evidence Code Pubs
located_in chloroplast ISM
Inferred from Sequence Model
more info
  
located_in mitochondrion IDA
Inferred from Direct Assay
more info
 PubMed 

General protein information

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Preferred Names
Trimeric LpxA-like enzymes superfamily protein
NP_193854.2
  • Trimeric LpxA-like enzymes superfamily protein; FUNCTIONS IN: transferase activity; CONTAINS InterPro DOMAIN/s: Trimeric LpxA-like (InterPro:IPR011004); BEST Arabidopsis thaliana protein match is: Trimeric LpxA-like enzymes superfamily protein (TAIR:AT4G05210.1); Has 11236 Blast hits to 11169 proteins in 1804 species: Archae - 57; Bacteria - 7331; Metazoa - 7; Fungi - 9; Plants - 63; Viruses - 0; Other Eukaryotes - 3769 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003075.7 Reference assembly

    Range
    11316828..11319137 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_118241.3 → NP_193854.2  Trimeric LpxA-like enzymes superfamily protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_193854.2

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    F4JIP6, O49563
    UniProtKB/TrEMBL
    A0A5S9XV22, A0A654FRG4
    Conserved Domains (1) summary
    PRK00892
    Location:84 → 295
    lpxD; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; Provisional
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
F4JIP6.1

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