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NAD(P)-binding Rossmann-fold superfamily protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 827615, updated on 18-Sep-2024

Summary

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Official Full Name
NAD(P)-binding Rossmann-fold superfamily protein
Primary source
TAIR:AT4G18810
Locus tag
AT4G18810
See related
Araport:AT4G18810
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F28A21.220; F28A21_220
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Genomic context

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Location:
chromosome: 4
Exon count:
16
Sequence:
Chromosome: 4; NC_003075.7 (10322060..10325906, complement)

Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene NRAMP metal ion transporter family protein Neighboring gene RAB GTPase homolog A1D Neighboring gene tRNA-Gly Neighboring gene AAA-type ATPase family protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003075.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Large-scale characterization of integral proteins from Arabidopsis vacuolar membrane by two-dimensional liquid chromatography. Szponarski W, et al. Proteomics, 2004 Feb. PMID 14760709
  2. AT_CHLORO, a comprehensive chloroplast proteome database with subplastidial localization and curated information on envelope proteins. Ferro M, et al. Mol Cell Proteomics, 2010 Jun. PMID 20061580, Free PMC Article
  3. Sorting signals, N-terminal modifications and abundance of the chloroplast proteome. Zybailov B, et al. PLoS One, 2008 Apr 23. PMID 18431481, Free PMC Article
  4. Global Analysis of Membrane-associated Protein Oligomerization Using Protein Correlation Profiling. McBride Z, et al. Mol Cell Proteomics, 2017 Nov. PMID 28887381, Free PMC Article
  5. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

GeneRIFs: Gene References Into Functions

General gene information

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Homology

NM_001203835.1
NM_117997.5

Gene Ontology Provided by TAIR

Component Evidence Code Pubs
located_in chloroplast HDA PubMed 
located_in chloroplast ISM
Inferred from Sequence Model
more info
  
located_in chloroplast stroma HDA PubMed 
located_in cytosol HDA PubMed 
located_in vacuole HDA PubMed 

General protein information

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Preferred Names
NAD(P)-binding Rossmann-fold superfamily protein
NP_001190764.1
  • NAD(P)-binding Rossmann-fold superfamily protein; FUNCTIONS IN: binding, catalytic activity; INVOLVED IN: metabolic process; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NAD(P)-binding domain (InterPro:IPR016040), NADH:ubiquinone oxidoreductase intermediate-associated protein 30 (InterPro:IPR013857), NmrA-like (InterPro:IPR008030); BEST Arabidopsis thaliana protein match is: high chlorophyll fluorescence phenotype 173 (TAIR:AT1G16720.1).
NP_193616.2
  • NAD(P)-binding Rossmann-fold superfamily protein; FUNCTIONS IN: binding, catalytic activity; INVOLVED IN: metabolic process; LOCATED IN: chloroplast, vacuole; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NAD(P)-binding domain (InterPro:IPR016040), NADH:ubiquinone oxidoreductase intermediate-associated protein 30 (InterPro:IPR013857), NmrA-like (InterPro:IPR008030); BEST Arabidopsis thaliana protein match is: high chlorophyll fluorescence phenotype 173 (TAIR:AT1G16720.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003075.7 Reference assembly

    Range
    10322060..10325906 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_117997.5 → NP_193616.2  NAD(P)-binding Rossmann-fold superfamily protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_193616.2

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178UYQ1, A0A7G2EZ78, Q8VYA4
    Conserved Domains (3) summary
    PLN03209
    Location:76 → 159
    PLN03209; translocon at the inner envelope of chloroplast subunit 62; Provisional
    pfam08547
    Location:268 → 428
    CIA30; Complex I intermediate-associated protein 30 (CIA30)
    cl21454
    Location:442 → 549
    NADB_Rossmann; Rossmann-fold NAD(P)(+)-binding proteins

  2. NM_001203835.1 → NP_001190764.1  NAD(P)-binding Rossmann-fold superfamily protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001190764.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A7G2EZ78, F4JRN8
    Conserved Domains (3) summary
    COG0702
    Location:125 → 210
    YbjT; Uncharacterized conserved protein YbjT, contains NAD(P)-binding and DUF2867 domains [General function prediction only]
    pfam08547
    Location:268 → 428
    CIA30; Complex I intermediate-associated protein 30 (CIA30)
    cl21454
    Location:442 → 549
    NADB_Rossmann; Rossmann-fold NAD(P)(+)-binding proteins
Nucleotide Protein
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