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LOC8275228 probable xyloglucan endotransglucosylase/hydrolase protein 32 [ Ricinus communis (castor bean) ]

Gene ID: 8275228, updated on 30-Nov-2023

Summary

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Gene symbol
LOC8275228
Gene description
probable xyloglucan endotransglucosylase/hydrolase protein 32
Locus tag
RCOM_0474040
Gene type
protein coding
RefSeq status
MODEL
Organism
Ricinus communis
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
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Genomic context

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See LOC8275228 in Genome Data Viewer
Location:
chromosome: 8
Exon count:
4
Annotation release Status Assembly Chr Location
102 current ASM1957865v1 (GCF_019578655.1) 8 NC_063263.1 (15443759..15445865, complement)
101 previous assembly JCVI_RCG_1.1 (GCF_000151685.1) Unplaced Scaffold NW_002994426.1 (187683..189834)

Chromosome 8 - NC_063263.1Genomic Context describing neighboring genes Neighboring gene probable glucuronoxylan glucuronosyltransferase IRX7 Neighboring gene transfer RNA tyrosine (anticodon GUA) Neighboring gene vacuolar protein sorting-associated protein 24 homolog 1 Neighboring gene carboxypeptidase C

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables hydrolase activity, hydrolyzing O-glycosyl compounds IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables xyloglucan:xyloglucosyl transferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell wall biogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in xyloglucan metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in apoplast IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cell wall IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable xyloglucan endotransglucosylase/hydrolase protein 32

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Ricinus communis Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1957865v1

Genomic

  1. NC_063263.1 Reference ASM1957865v1

    Range
    15443759..15445865 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002523663.4 → XP_002523709.1  probable xyloglucan endotransglucosylase/hydrolase protein 32

    See identical proteins and their annotated locations for XP_002523709.1

    UniProtKB/TrEMBL
    B9SCJ0
    Conserved Domains (1) summary
    cl22861
    Location:36 → 293
    LamG; Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of ...
Nucleotide Protein
Heading Accession and Version

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