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TPS03 terpene synthase 03 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 827377, updated on 18-Sep-2024

Summary

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Official Symbol
TPS03
Official Full Name
terpene synthase 03
Primary source
TAIR:AT4G16740
Locus tag
AT4G16740
See related
Araport:AT4G16740
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
ATTPS03; DL4395W; FCAALL.18; terpene synthase 03
Summary
Encodes an (E,E)-alpha-farnesene synthase in the Col ecotype of Arabidopsis. This enzyme can also catalyze the formation of (E)-beta-ocimene as well as trace amounts of myrcene and other related compounds in vitro. The cytosolic localization of the protein may make it favor (E,E)-alpha-farnesene biosynthesis because the precursor of this product, FPP, is primarily cytosolic. Transcript levels for this gene increase in response to treatment with the jasmonic acid mimic coronalon or in response to the insect <i>Plutella xylostella</i>. TPS03 transcripts can also be detected in flowers. A similar protein from the C24 ecotype with one amino acid change (S267F) has a different substrate specificity.
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Genomic context

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See TPS03 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
5
Sequence:
Chromosome: 4; NC_003075.7 (9407611..9411140)

Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene glycosyltransferase family protein 28 Neighboring gene Ribosomal protein L23/L15e family protein Neighboring gene terpene synthase 02 Neighboring gene Exostosin family protein Neighboring gene ncRNA Neighboring gene ncRNA

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003075.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Functional identification of AtTPS03 as (E)-beta-ocimene synthase: a monoterpene synthase catalyzing jasmonate- and wound-induced volatile formation in Arabidopsis thaliana. Fäldt J, et al. Planta, 2003 Mar. PMID 12624761
  2. Light-regulated expression of terpene synthase gene, AtTPS03, is controlled by the bZIP transcription factor, HY5, in Arabidopsis thaliana. Michael R, et al. Biochem Biophys Res Commun, 2020 Aug 20. PMID 32703448
  3. Variation of herbivore-induced volatile terpenes among Arabidopsis ecotypes depends on allelic differences and subcellular targeting of two terpene synthases, TPS02 and TPS03. Huang M, et al. Plant Physiol, 2010 Jul. PMID 20463089, Free PMC Article
  4. The Arabidopsis E3 SUMO ligase SIZ1 regulates plant growth and drought responses. Catala R, et al. Plant Cell, 2007 Sep. PMID 17905899, Free PMC Article
  5. Herbivore-induced volatile production by Arabidopsis thaliana leads to attraction of the parasitoid Cotesia rubecula: chemical, behavioral, and gene-expression analysis. Van Poecke RM, et al. J Chem Ecol, 2001 Oct. PMID 11710601

See all (6) citations in PubMed

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. Light-regulated expression of terpene synthase gene, AtTPS03, is controlled by the bZIP transcription factor, HY5, in Arabidopsis thaliana.
    Title: Light-regulated expression of terpene synthase gene, AtTPS03, is controlled by the bZIP transcription factor, HY5, in Arabidopsis thaliana.
  2. Differences in the relative emissions of (E)-beta-ocimene and (E,E)-alpha-farnesene from different accessions were attributed to allelic variation of two closely related, tandem-duplicated terpene synthase genes, TPS02 and TPS03. [TPS03]
    Title: Variation of herbivore-induced volatile terpenes among Arabidopsis ecotypes depends on allelic differences and subcellular targeting of two terpene synthases, TPS02 and TPS03.
Submit: New GeneRIF Correction

Pathways from PubChem

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General gene information

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NM_001036574.1
NM_117775.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables (E)-beta-ocimene synthase activity IDA
Inferred from Direct Assay
more info
 PubMed 
enables alpha-farnesene synthase activity IMP
Inferred from Mutant Phenotype
more info
 PubMed 
enables magnesium ion binding IEA
Inferred from Electronic Annotation
more info
  
enables myrcene synthase activity IDA
Inferred from Direct Assay
more info
 PubMed 
enables terpene synthase activity IEA
Inferred from Electronic Annotation
more info
  
enables terpene synthase activity ISS
Inferred from Sequence or Structural Similarity
more info
  
enables tricyclene synthase activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in diterpenoid biosynthetic process IEA
Inferred from Electronic Annotation
more info
  
involved_in response to herbivore IEP
Inferred from Expression Pattern
more info
 PubMed 
acts_upstream_of_or_within response to insect IEP
Inferred from Expression Pattern
more info
 PubMed 
involved_in response to jasmonic acid IEP
Inferred from Expression Pattern
more info
 PubMed 
acts_upstream_of_or_within response to wounding IEP
Inferred from Expression Pattern
more info
 PubMed 
involved_in response to wounding IEP
Inferred from Expression Pattern
more info
 PubMed 
acts_upstream_of_or_within sesquiterpenoid biosynthetic process IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Component Evidence Code Pubs
located_in chloroplast ISM
Inferred from Sequence Model
more info
  
located_in chloroplast stroma ISS
Inferred from Sequence or Structural Similarity
more info
  
located_in cytosol IDA
Inferred from Direct Assay
more info
 PubMed 

General protein information

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Preferred Names
terpene synthase 03
NP_001031651.1
  • terpene synthase 03 (TPS03); CONTAINS InterPro DOMAIN/s: Terpene synthase, metal-binding domain (InterPro:IPR005630), Terpenoid synthase (InterPro:IPR008949), Terpenoid cylases/protein prenyltransferase alpha-alpha toroid (InterPro:IPR008930), Terpene synthase-like (InterPro:IPR001906); BEST Arabidopsis thaliana protein match is: terpene synthase-like sequence-1,8-cineole (TAIR:AT3G25820.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
NP_567511.3
  • terpene synthase 03 (TPS03); CONTAINS InterPro DOMAIN/s: Terpene synthase, metal-binding domain (InterPro:IPR005630), Terpenoid synthase (InterPro:IPR008949), Terpenoid cylases/protein prenyltransferase alpha-alpha toroid (InterPro:IPR008930), Terpene synthase-like (InterPro:IPR001906); BEST Arabidopsis thaliana protein match is: terpene synthase-like sequence-1,8-cineole (TAIR:AT3G25820.1); Has 1726 Blast hits to 1699 proteins in 178 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1722; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003075.7 Reference assembly

    Range
    9407611..9411140
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001341133.1 → NP_001329376.1  terpene synthase 03 [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8B7I0

  2. NM_001341134.1 → NP_001329377.1  terpene synthase 03 [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8B7I0

  3. NM_117775.4 → NP_567511.3  terpene synthase 03 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_567511.3

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    A4FVP2, O23517, Q84NE5, Q8GWA8, Q8LE37, Q9FVI5
    UniProtKB/TrEMBL
    A0A5S9XT42, A0A654FQ20
    Conserved Domains (1) summary
    cd00684
    Location:26 → 561
    Terpene_cyclase_plant_C1; Plant Terpene Cyclases, Class 1

  4. NM_001036574.1 → NP_001031651.1  terpene synthase 03 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001031651.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    A4FVP2
    Conserved Domains (1) summary
    cd00684
    Location:26 → 392
    Terpene_cyclase_plant_C1; Plant Terpene Cyclases, Class 1
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
A4FVP2.1

Gene LinkOut

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