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LOC8271197 probable beta-1,4-xylosyltransferase IRX9H [ Ricinus communis (castor bean) ]

Gene ID: 8271197, updated on 30-Nov-2023

Summary

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Gene symbol
LOC8271197
Gene description
probable beta-1,4-xylosyltransferase IRX9H
Locus tag
RCOM_0802770
Gene type
protein coding
RefSeq status
MODEL
Organism
Ricinus communis
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
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Genomic context

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See LOC8271197 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
5
Annotation release Status Assembly Chr Location
102 current ASM1957865v1 (GCF_019578655.1) 3 NC_063258.1 (30970706..30974723)
101 previous assembly JCVI_RCG_1.1 (GCF_000151685.1) Unplaced Scaffold NW_002994311.1 (894360..898418)

Chromosome 3 - NC_063258.1Genomic Context describing neighboring genes Neighboring gene NHS-like protein 1 Neighboring gene ER membrane protein complex subunit 1 Neighboring gene transfer RNA serine (anticodon CGA) Neighboring gene TOM1-like protein 9

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables xylosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in glucuronoxylan biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in plant-type secondary cell wall biogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable beta-1,4-xylosyltransferase IRX9H

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Ricinus communis Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1957865v1

Genomic

  1. NC_063258.1 Reference ASM1957865v1

    Range
    30970706..30974723
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015717697.3 → XP_015573183.1  probable beta-1,4-xylosyltransferase IRX9H isoform X2

    Conserved Domains (1) summary
    cd00218
    Location:185 → 409
    GlcAT-I; Beta1,3-glucuronyltransferase I (GlcAT-I) is involved in the initial steps of proteoglycan synthesis

  2. XM_002516511.4 → XP_002516557.1  probable beta-1,4-xylosyltransferase IRX9H isoform X1

    See identical proteins and their annotated locations for XP_002516557.1

    UniProtKB/TrEMBL
    B9RS38
    Conserved Domains (1) summary
    cd00218
    Location:185 → 416
    GlcAT-I; Beta1,3-glucuronyltransferase I (GlcAT-I) is involved in the initial steps of proteoglycan synthesis
Nucleotide Protein
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