zein-binding protein (Protein of unknown function, DUF593) [Arabidopsis thaliana (thale cress)] - Gene

Summary

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Official Full Name: zein-binding protein (Protein of unknown function, DUF593)
Primary source: TAIR:AT4G13630
Locus tag: AT4G13630
See related: Araport:AT4G13630
Gene type: protein coding
RefSeq status: REVIEWED
Organism: Arabidopsis thaliana (ecotype: Columbia)
Lineage: Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as: F18A5.20; F18A5_20
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Genomic context

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See in Genome Data Viewer

Location:: chromosome: 4

Exon count:: 4

Sequence:: Chromosome: 4; NC_003075.7 (7933684..7936565, complement)

Chromosome 4 - NC_003075.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Go to reference sequence details

Genomic Sequence:: NC_003075.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Homology

Orthologs from OrthoDB

NM_001203790.2

Supported by ESTs:

NM_001340870.1

Supported by ESTs:

Gene Ontology Provided by TAIR

Function	Evidence Code	Pubs
enables molecular_function	ND No biological Data available more info

Process	Evidence Code	Pubs
involved_in biological_process	ND No biological Data available more info

Component	Evidence Code	Pubs
located_in nucleus	ISM Inferred from Sequence Model more info

General protein information

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Preferred Names: zein-binding protein (Protein of unknown function, DUF593)

NP_001190719.1

Protein of unknown function, DUF593; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF593 (InterPro:IPR007656); BEST Arabidopsis thaliana protein match is: Protein of unknown function, DUF593 (TAIR:AT1G04890.1).

NP_001319921.1

Protein of unknown function, DUF593; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF593 (InterPro:IPR007656); BEST Arabidopsis thaliana protein match is: Protein of unknown function, DUF593 (TAIR:AT1G04890.1); Has 608 Blast hits to 585 proteins in 84 species: Archae - 0; Bacteria - 9; Metazoa - 158; Fungi - 22; Plants - 359; Viruses - 2; Other Eukaryotes - 58 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

NC_003075.7 Reference assembly

Range

7933684..7936565 complement

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

NM_001203790.2 → NP_001190719.1 zein-binding protein (Protein of unknown function, DUF593) [Arabidopsis thaliana]

See identical proteins and their annotated locations for NP_001190719.1

Status: REVIEWED

UniProtKB/TrEMBL

F4JT43, Q9SVP9

Conserved Domains (1) summary

pfam04576
Location:226 → 314

Zein-binding; Zein-binding
NM_001340870.1 → NP_001319921.1 zein-binding protein (Protein of unknown function, DUF593) [Arabidopsis thaliana]

Status: REVIEWED

UniProtKB/TrEMBL

F4JT43, Q9SVP9

Conserved Domains (1) summary

pfam04576
Location:226 → 314

Zein-binding; Zein-binding