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LOC8266784 isoamylase 2, chloroplastic [ Ricinus communis (castor bean) ]

Gene ID: 8266784, updated on 30-Nov-2023

Summary

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Gene symbol
LOC8266784
Gene description
isoamylase 2, chloroplastic
Locus tag
RCOM_0176490
Gene type
protein coding
RefSeq status
MODEL
Organism
Ricinus communis
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
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Genomic context

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See LOC8266784 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
2
Annotation release Status Assembly Chr Location
102 current ASM1957865v1 (GCF_019578655.1) 1 NC_063256.1 (6660345..6663739, complement)
101 previous assembly JCVI_RCG_1.1 (GCF_000151685.1) Unplaced Scaffold NW_002994965.1 (85936..89749)

Chromosome 1 - NC_063256.1Genomic Context describing neighboring genes Neighboring gene mediator of RNA polymerase II transcription subunit 33B Neighboring gene protein PALE CRESS, chloroplastic Neighboring gene CSC1-like protein At4g02900 Neighboring gene EID1-like F-box protein 3

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables isoamylase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in starch biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
isoamylase 2, chloroplastic

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Ricinus communis Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1957865v1

Genomic

  1. NC_063256.1 Reference ASM1957865v1

    Range
    6660345..6663739 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002533033.4 → XP_002533079.1  isoamylase 2, chloroplastic

    See identical proteins and their annotated locations for XP_002533079.1

    UniProtKB/TrEMBL
    B9T4B0
    Conserved Domains (2) summary
    cd02856
    Location:224 → 365
    E_set_GDE_Isoamylase_N; N-terminal Early set domain associated with the catalytic domain of Glycogen debranching enzyme and bacterial isoamylase (also called glycogen 6-glucanohydrolase)
    cd11346
    Location:359 → 746
    AmyAc_plant_IsoA; Alpha amylase catalytic domain family found in plant isoamylases

  2. XM_015727750.3 → XP_015583236.1  isoamylase 2, chloroplastic

    UniProtKB/TrEMBL
    B9T4B0
    Conserved Domains (2) summary
    cd02856
    Location:224 → 365
    E_set_GDE_Isoamylase_N; N-terminal Early set domain associated with the catalytic domain of Glycogen debranching enzyme and bacterial isoamylase (also called glycogen 6-glucanohydrolase)
    cd11346
    Location:359 → 746
    AmyAc_plant_IsoA; Alpha amylase catalytic domain family found in plant isoamylases
Nucleotide Protein
Heading Accession and Version

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