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LOC8266340 malate synthase, glyoxysomal [ Ricinus communis (castor bean) ]

Gene ID: 8266340, updated on 30-Nov-2023

Summary

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Gene symbol
LOC8266340
Gene description
malate synthase, glyoxysomal
Locus tag
RCOM_1506900
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Ricinus communis
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
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Genomic context

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See LOC8266340 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
4
Annotation release Status Assembly Chr Location
102 current ASM1957865v1 (GCF_019578655.1) 4 NC_063259.1 (27668265..27670473, complement)
101 previous assembly JCVI_RCG_1.1 (GCF_000151685.1) Unplaced Scaffold NW_002994278.1 (2532730..2534938)

Chromosome 4 - NC_063259.1Genomic Context describing neighboring genes Neighboring gene secreted RxLR effector protein 161-like Neighboring gene uncharacterized LOC8266341 Neighboring gene cyclin-dependent kinase 11B Neighboring gene uncharacterized LOC8266338

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Nucleotide sequence analysis of a cDNA clone encoding malate synthase of castor bean (Ricinus communis) reveals homology to DAL7, a gene involved in allantoin degradation in Saccharomyces cerevisiae. Rodriguez D, et al. Plant Mol Biol, 1990 Sep. PMID 2103467
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables malate synthase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in glyoxylate cycle IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
malate synthase, glyoxysomal
NP_001310646.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001323717.1 → NP_001310646.1  malate synthase, glyoxysomal

    Status: PROVISIONAL

    Source sequence(s)
    X52806
    UniProtKB/Swiss-Prot
    P17815
    UniProtKB/TrEMBL
    B9RAK0
    Conserved Domains (1) summary
    PLN02626
    Location:14 → 567
    PLN02626; malate synthase

RefSeqs of Annotated Genomes: Ricinus communis Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1957865v1

Genomic

  1. NC_063259.1 Reference ASM1957865v1

    Range
    27668265..27670473 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
P17815.1 GenPept UniProtKB/Swiss-Prot:P17815

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials