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ORP1C OSBP(oxysterol binding protein)-related protein 1C [ Arabidopsis thaliana (thale cress) ]

Gene ID: 826368, updated on 18-Sep-2024

Summary

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Official Symbol
ORP1C
Official Full Name
OSBP(oxysterol binding protein)-related protein 1C
Primary source
TAIR:AT4G08180
Locus tag
AT4G08180
See related
Araport:AT4G08180
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
OSBP(oxysterol binding protein)-related protein 1C; T12G13.20; T12G13_20
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Genomic context

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See ORP1C in Genome Data Viewer
Location:
chromosome: 4
Exon count:
11
Sequence:
Chromosome: 4; NC_003075.7 (5169459..5174107)

Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein Neighboring gene Inositol 1,3,4-trisphosphate 5/6-kinase family protein Neighboring gene P-loop containing nucleoside triphosphate hydrolases superfamily protein Neighboring gene pseudo

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003075.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Learning the lipid language of plant signalling. van Leeuwen W, et al. Trends Plant Sci, 2004 Aug. PMID 15358268
  2. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

GeneRIFs: Gene References Into Functions

General gene information

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NM_001340578.1
NM_116887.3
NM_179012.2
NM_202789.1

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables phosphatidylinositol binding ISS
Inferred from Sequence or Structural Similarity
more info
 PubMed 
Process Evidence Code Pubs
acts_upstream_of_or_within signal transduction ISS
Inferred from Sequence or Structural Similarity
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
OSBP(oxysterol binding protein)-related protein 1C
NP_001319881.1
  • OSBP(oxysterol binding protein)-related protein 1C (ORP1C); FUNCTIONS IN: phosphoinositide binding, oxysterol binding; INVOLVED IN: steroid metabolic process, signal transduction; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Pleckstrin homology-type (InterPro:IPR011993), Oxysterol-binding protein (InterPro:IPR000648), Pleckstrin homology (InterPro:IPR001849); BEST Arabidopsis thaliana protein match is: OSBP(oxysterol binding protein)-related protein 1A (TAIR:AT2G31020.1); Has 2760 Blast hits to 2567 proteins in 218 species: Archae - 0; Bacteria - 4; Metazoa - 1466; Fungi - 697; Plants - 301; Viruses - 0; Other Eukaryotes - 292 (source: NCBI BLink).
NP_849343.2
  • OSBP(oxysterol binding protein)-related protein 1C (ORP1C); FUNCTIONS IN: phosphoinositide binding, oxysterol binding; INVOLVED IN: steroid metabolic process, signal transduction; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Pleckstrin homology-type (InterPro:IPR011993), Pleckstrin homology (InterPro:IPR001849), Oxysterol-binding protein (InterPro:IPR000648); BEST Arabidopsis thaliana protein match is: OSBP(oxysterol binding protein)-related protein 1A (TAIR:AT2G31020.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
NP_974518.1
  • OSBP(oxysterol binding protein)-related protein 1C (ORP1C); FUNCTIONS IN: phosphoinositide binding, oxysterol binding; INVOLVED IN: steroid metabolic process, signal transduction; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Pleckstrin homology-type (InterPro:IPR011993), Oxysterol-binding protein (InterPro:IPR000648), Pleckstrin homology (InterPro:IPR001849); BEST Arabidopsis thaliana protein match is: OSBP(oxysterol binding protein)-related protein 1A (TAIR:AT2G31020.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003075.7 Reference assembly

    Range
    5169459..5174107
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001340578.1 → NP_001319881.1  OSBP(oxysterol binding protein)-related protein 1C [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q3E6U4, Q56XA3, Q56ZH2, Q8L751, Q9SUG2
    UniProtKB/TrEMBL
    A0A654FM88, A0A7G2F1X7
    Conserved Domains (2) summary
    cd13294
    Location:106 → 242
    PH_ORP_plant; Plant Oxysterol binding protein related protein Pleckstrin homology (PH) domain
    pfam01237
    Location:437 → 789
    Oxysterol_BP; Oxysterol-binding protein

  2. NM_116887.3 → NP_192558.2  OSBP(oxysterol binding protein)-related protein 1C [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_192558.2

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q3E6U4, Q56XA3, Q56ZH2, Q8L751, Q9SUG2
    UniProtKB/TrEMBL
    A0A654FM88, A0A7G2F1X7
    Conserved Domains (2) summary
    cd13294
    Location:106 → 242
    PH_ORP_plant; Plant Oxysterol binding protein related protein Pleckstrin homology (PH) domain
    pfam01237
    Location:437 → 789
    Oxysterol_BP; Oxysterol-binding protein

  3. NM_202789.1 → NP_974518.1  OSBP(oxysterol binding protein)-related protein 1C [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_974518.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A654FM88
    Conserved Domains (3) summary
    cd13294
    Location:106 → 242
    PH_ORP_plant; Plant Oxysterol binding protein related protein Pleckstrin homology (PH) domain
    pfam00169
    Location:108 → 234
    PH; PH domain
    pfam01237
    Location:436 → 788
    Oxysterol_BP; Oxysterol-binding protein

  4. NM_179012.2 → NP_849343.2  OSBP(oxysterol binding protein)-related protein 1C [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_849343.2

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A654FM88, A0A7G2F1A0, F4JFW6
    Conserved Domains (2) summary
    cd13294
    Location:106 → 242
    PH_ORP_plant; Plant Oxysterol binding protein related protein Pleckstrin homology (PH) domain
    pfam01237
    Location:436 → 788
    Oxysterol_BP; Oxysterol-binding protein
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q8L751.1

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