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LOC8262699 alpha-(1,4)-fucosyltransferase [ Ricinus communis (castor bean) ]

Gene ID: 8262699, updated on 30-Nov-2023

Summary

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Gene symbol
LOC8262699
Gene description
alpha-(1,4)-fucosyltransferase
Locus tag
RCOM_0685080
Gene type
protein coding
RefSeq status
MODEL
Organism
Ricinus communis
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
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Genomic context

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See LOC8262699 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
3
Annotation release Status Assembly Chr Location
102 current ASM1957865v1 (GCF_019578655.1) 2 NC_063257.1 (10027465..10032589, complement)
101 previous assembly JCVI_RCG_1.1 (GCF_000151685.1) Unplaced Scaffold NW_002994521.1 (7688..12797, complement)

Chromosome 2 - NC_063257.1Genomic Context describing neighboring genes Neighboring gene beta-amyrin 6-beta-monooxygenase-like Neighboring gene beta-amyrin 6-beta-monooxygenase Neighboring gene carbamoyl-phosphate synthase small chain, chloroplastic Neighboring gene uncharacterized LOC8262698

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables alpha-(1->3)-fucosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in fucosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein glycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
alpha-(1,4)-fucosyltransferase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Ricinus communis Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1957865v1

Genomic

  1. NC_063257.1 Reference ASM1957865v1

    Range
    10027465..10032589 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002526754.4 → XP_002526800.1  alpha-(1,4)-fucosyltransferase

    See identical proteins and their annotated locations for XP_002526800.1

    UniProtKB/TrEMBL
    B9SLD1
    Conserved Domains (1) summary
    pfam00852
    Location:234 → 409
    Glyco_transf_10; Glycosyltransferase family 10 (fucosyltransferase) C-term
Nucleotide Protein
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