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LOC8262063 callose synthase 12 [ Ricinus communis (castor bean) ]

Gene ID: 8262063, updated on 30-Nov-2023

Summary

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Gene symbol
LOC8262063
Gene description
callose synthase 12
Locus tag
RCOM_1174510
Gene type
protein coding
RefSeq status
MODEL
Organism
Ricinus communis
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
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Genomic context

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See LOC8262063 in Genome Data Viewer
Location:
chromosome: 7
Exon count:
4
Annotation release Status Assembly Chr Location
102 current ASM1957865v1 (GCF_019578655.1) 7 NC_063262.1 (1021952..1029519)
101 previous assembly JCVI_RCG_1.1 (GCF_000151685.1) Unplaced Scaffold NW_002994326.1 (523947..531363, complement)

Chromosome 7 - NC_063262.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC125370585 Neighboring gene callose synthase 12 Neighboring gene small nucleolar RNA J33 Neighboring gene small nucleolar RNA J33 Neighboring gene two pore calcium channel protein 1 Neighboring gene two pore calcium channel protein 1A Neighboring gene uncharacterized LOC125370506

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables 1,3-beta-D-glucan synthase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in (1->3)-beta-D-glucan biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of 1,3-beta-D-glucan synthase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
callose synthase 12

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Ricinus communis Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1957865v1

Genomic

  1. NC_063262.1 Reference ASM1957865v1

    Range
    1021952..1029519
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_048376371.1 → XP_048232328.1  callose synthase 12

    UniProtKB/TrEMBL
    B9RVZ6
    Conserved Domains (2) summary
    pfam02364
    Location:871 → 1637
    Glucan_synthase; 1,3-beta-glucan synthase component
    pfam14288
    Location:167 → 268
    FKS1_dom1; 1,3-beta-glucan synthase subunit FKS1, domain-1

  2. XM_002517869.4 → XP_002517915.1  callose synthase 12

    See identical proteins and their annotated locations for XP_002517915.1

    UniProtKB/TrEMBL
    B9RVZ6
    Conserved Domains (2) summary
    pfam02364
    Location:871 → 1637
    Glucan_synthase; 1,3-beta-glucan synthase component
    pfam14288
    Location:167 → 268
    FKS1_dom1; 1,3-beta-glucan synthase subunit FKS1, domain-1

RNA

  1. XR_001535144.3 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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Molecular Biology Databases
Research Materials