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LOC8259418 hydroxyproline O-galactosyltransferase HPGT3 [ Ricinus communis (castor bean) ]

Gene ID: 8259418, updated on 30-Nov-2023

Summary

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Gene symbol
LOC8259418
Gene description
hydroxyproline O-galactosyltransferase HPGT3
Locus tag
RCOM_0923250
Gene type
protein coding
RefSeq status
MODEL
Organism
Ricinus communis
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
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Genomic context

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See LOC8259418 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
12
Annotation release Status Assembly Chr Location
102 current ASM1957865v1 (GCF_019578655.1) 3 NC_063258.1 (32150766..32154369)
101 previous assembly JCVI_RCG_1.1 (GCF_000151685.1) Unplaced Scaffold NW_002994295.1 (864637..868312, complement)

Chromosome 3 - NC_063258.1Genomic Context describing neighboring genes Neighboring gene uncharacterized transporter C405.03c Neighboring gene ER membrane protein complex subunit 7 homolog Neighboring gene cysteine--tRNA ligase, chloroplastic/mitochondrial Neighboring gene heparanase-like protein 3

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables hexosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein glycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
hydroxyproline O-galactosyltransferase HPGT3
Names
probable beta-1,3-galactosyltransferase 9

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Ricinus communis Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1957865v1

Genomic

  1. NC_063258.1 Reference ASM1957865v1

    Range
    32150766..32154369
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002515434.4 → XP_002515480.2  hydroxyproline O-galactosyltransferase HPGT3 isoform X1

    UniProtKB/TrEMBL
    B9RP11
    Conserved Domains (2) summary
    pfam13334
    Location:22 → 100
    DUF4094; Domain of unknown function (DUF4094)
    cl21608
    Location:135 → 329
    Galactosyl_T; Galactosyltransferase

  2. XM_048372152.1 → XP_048228109.1  hydroxyproline O-galactosyltransferase HPGT3 isoform X2

Nucleotide Protein
Heading Accession and Version

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Molecular Biology Databases
Research Materials