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LOC8258240 hydroxyproline O-arabinosyltransferase NOD3 [ Ricinus communis (castor bean) ]

Gene ID: 8258240, updated on 30-Nov-2023

Summary

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Gene symbol
LOC8258240
Gene description
hydroxyproline O-arabinosyltransferase NOD3
Locus tag
RCOM_1477970
Gene type
protein coding
RefSeq status
MODEL
Organism
Ricinus communis
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
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Genomic context

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See LOC8258240 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
10
Annotation release Status Assembly Chr Location
102 current ASM1957865v1 (GCF_019578655.1) 1 NC_063256.1 (33672448..33677829)
101 previous assembly JCVI_RCG_1.1 (GCF_000151685.1) Unplaced Scaffold NW_002994486.1 (3357..6181)

Chromosome 1 - NC_063256.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC8268534 Neighboring gene ABC transporter G family member 23 Neighboring gene non-specific phospholipase C2 Neighboring gene nonsense-mediated mRNA decay factor SMG7

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables glycosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
hydroxyproline O-arabinosyltransferase NOD3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Ricinus communis Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1957865v1

Genomic

  1. NC_063256.1 Reference ASM1957865v1

    Range
    33672448..33677829
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    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_048375502.1 → XP_048231459.1  hydroxyproline O-arabinosyltransferase NOD3

  2. XM_048375508.1 → XP_048231465.1  hydroxyproline O-arabinosyltransferase NOD3

  3. XM_048375505.1 → XP_048231462.1  hydroxyproline O-arabinosyltransferase NOD3

Nucleotide Protein
Heading Accession and Version

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