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EMB3123 PPR containing protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 822397, updated on 18-Sep-2024

Summary

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Official Symbol
EMB3123
Official Full Name
PPR containing protein
Primary source
TAIR:AT3G27750
Locus tag
AT3G27750
See related
Araport:AT3G27750
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
EMBRYO DEFECTIVE 3123; THA8; Thylakoid Assembly 8
Summary
Encodes a pentatricopeptide repeat (PPR) protein required for the splicing of specific group II introns. Null alleles are embryo lethal.
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Genomic context

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See EMB3123 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
1
Sequence:
Chromosome: 3; NC_003074.8 (10284808..10285874)

Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene IBR domain containing protein Neighboring gene DNA helicase ROCK-N-ROLLERS Neighboring gene carbamoyl phosphate synthetase A Neighboring gene ncRNA Neighboring gene plant/protein Neighboring gene myb domain protein 118 Neighboring gene ncRNA

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003074.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Structure of a PLS-class pentatricopeptide repeat protein provides insights into mechanism of RNA recognition. Ban T, et al. J Biol Chem, 2013 Nov 1. PMID 24047899, Free PMC Article
  2. A short PPR protein required for the splicing of specific group II introns in angiosperm chloroplasts. Khrouchtchova A, et al. RNA, 2012 Jun. PMID 22495966, Free PMC Article
  3. Identification of genes required for embryo development in Arabidopsis. Tzafrir I, et al. Plant Physiol, 2004 Jul. PMID 15266054, Free PMC Article
  4. Sorting signals, N-terminal modifications and abundance of the chloroplast proteome. Zybailov B, et al. PLoS One, 2008 Apr 23. PMID 18431481, Free PMC Article
  5. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

GeneRIFs: Gene References Into Functions

General gene information

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Homology

NM_113691.2

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables RNA binding IDA
Inferred from Direct Assay
more info
 PubMed 
enables sequence-specific mRNA binding IDA
Inferred from Direct Assay
more info
 PubMed 
enables single-stranded RNA binding ISS
Inferred from Sequence or Structural Similarity
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within Group II intron splicing IMP
Inferred from Mutant Phenotype
more info
 PubMed 
acts_upstream_of_or_within chloroplast organization IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in embryo development ending in seed dormancy IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Component Evidence Code Pubs
located_in chloroplast HDA PubMed 
located_in chloroplast IDA
Inferred from Direct Assay
more info
 PubMed 
located_in chloroplast ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
PPR containing protein
NP_189412.1
  • FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: Vacuolar sorting protein 9 (VPS9) domain (TAIR:AT5G09320.1); Has 106 Blast hits to 106 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 4; Plants - 102; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003074.8 Reference assembly

    Range
    10284808..10285874
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_113691.2 → NP_189412.1  PPR containing protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_189412.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9LVW6
    UniProtKB/TrEMBL
    A0A178VLP1, A0A5S9XGK0
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9LVW6.1

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