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lysine ketoglutarate reductase trans-splicing protein (DUF707) [ Arabidopsis thaliana (thale cress) ]

Gene ID: 822368, updated on 18-Sep-2024

Summary

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Official Full Name
lysine ketoglutarate reductase trans-splicing protein (DUF707)
Primary source
TAIR:AT3G27470
Locus tag
AT3G27470
See related
Araport:AT3G27470
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Genomic context

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Location:
chromosome: 3
Exon count:
16
Sequence:
Chromosome: 3; NC_003074.8 (10162960..10167546)

Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene miscRNA Neighboring gene SGF29 tudor-like domain-containing protein Neighboring gene Cysteine/Histidine-rich C1 domain family protein Neighboring gene ncRNA Neighboring gene uncharacterized protein Neighboring gene Cysteine/Histidine-rich C1 domain family protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003074.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Putative glycosyltransferases and other plant Golgi apparatus proteins are revealed by LOPIT proteomics. Nikolovski N, et al. Plant Physiol, 2012 Oct. PMID 22923678, Free PMC Article
  2. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

GeneRIFs: Gene References Into Functions

General gene information

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NM_001084748.2
NM_001338880.1
NM_113662.5

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables glycosyltransferase activity ISM
Inferred from Sequence Model
more info
 PubMed 
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in mitochondrion ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
lysine ketoglutarate reductase trans-splicing protein (DUF707)
NP_001078217.1
  • Protein of unknown function (DUF707); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF707 (InterPro:IPR007877); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF707) (TAIR:AT1G67850.2); Has 321 Blast hits to 320 proteins in 25 species: Archae - 0; Bacteria - 11; Metazoa - 0; Fungi - 0; Plants - 305; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).
NP_189383.2
  • Protein of unknown function (DUF707); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF707 (InterPro:IPR007877); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF707) (TAIR:AT1G67850.2); Has 321 Blast hits to 320 proteins in 25 species: Archae - 0; Bacteria - 11; Metazoa - 0; Fungi - 0; Plants - 305; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003074.8 Reference assembly

    Range
    10162960..10167546
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001338878.1 → NP_001327536.1  lysine ketoglutarate reductase trans-splicing protein (DUF707) [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A5S9XGB4, A0A654FB87, Q8RXE2
    Conserved Domains (1) summary
    pfam05212
    Location:94 → 381
    DUF707; Protein of unknown function (DUF707)

  2. NM_001338879.1 → NP_001327534.1  lysine ketoglutarate reductase trans-splicing protein (DUF707) [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A5S9XGB4, A0A654FB87, Q8RXE2
    Conserved Domains (1) summary
    pfam05212
    Location:94 → 381
    DUF707; Protein of unknown function (DUF707)

  3. NM_001084748.2 → NP_001078217.1  lysine ketoglutarate reductase trans-splicing protein (DUF707) [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001078217.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A5S9XGB4, A0A654FB87, Q8RXE2
    Conserved Domains (1) summary
    pfam05212
    Location:94 → 381
    DUF707; Protein of unknown function (DUF707)

  4. NM_113662.5 → NP_189383.2  lysine ketoglutarate reductase trans-splicing protein (DUF707) [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_189383.2

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A5S9XGB4, A0A654FB87, Q8RXE2
    Conserved Domains (1) summary
    pfam05212
    Location:94 → 381
    DUF707; Protein of unknown function (DUF707)

  5. NM_001338880.1 → NP_001327535.1  lysine ketoglutarate reductase trans-splicing protein (DUF707) [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1I9LSL9, A0A5S9XGB4, A0A654FB87
Nucleotide Protein
Heading Accession and Version

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