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Pectate lyase family protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 822010, updated on 18-Sep-2024

Summary

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Official Full Name
Pectate lyase family protein
Primary source
TAIR:AT3G24230
Locus tag
AT3G24230
See related
Araport:AT3G24230
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Genomic context

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Location:
chromosome: 3
Exon count:
7
Sequence:
Chromosome: 3; NC_003074.8 (8774541..8777612)

Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene CLAVATA3/ESR-RELATED 19 Neighboring gene ncRNA Neighboring gene Leucine-rich repeat receptor-like protein kinase family protein Neighboring gene glycine-rich protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003074.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

GeneRIFs: Gene References Into Functions

General gene information

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NM_113328.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables lyase activity ISS
Inferred from Sequence or Structural Similarity
more info
  
enables pectate lyase activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in pectin catabolic process IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in extracellular region ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
Pectate lyase family protein
NP_189065.2
  • Pectate lyase family protein; FUNCTIONS IN: lyase activity, pectate lyase activity; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Pectin lyase fold/virulence factor (InterPro:IPR011050), AmbAllergen (InterPro:IPR018082), Pectate lyase/Amb allergen (InterPro:IPR002022), Pectin lyase fold (InterPro:IPR012334), Parallel beta-helix repeat (InterPro:IPR006626); BEST Arabidopsis thaliana protein match is: Pectin lyase-like superfamily protein (TAIR:AT4G13710.2); Has 1589 Blast hits to 1579 proteins in 269 species: Archae - 0; Bacteria - 695; Metazoa - 0; Fungi - 186; Plants - 699; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003074.8 Reference assembly

    Range
    8774541..8777612
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_113328.3 → NP_189065.2  Pectate lyase family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_189065.2

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9LRM5
    UniProtKB/TrEMBL
    A0A5S9XFJ6, A0A654FB66
    Conserved Domains (1) summary
    smart00656
    Location:178 → 373
    Amb_all; Amb_all domain
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9LRM5.1

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