Leucine-rich repeat protein kinase family protein [Arabidopsis thaliana (thale cress)] - Gene

Summary

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Official Full Name: Leucine-rich repeat protein kinase family protein
Primary source: TAIR:AT3G02880
Locus tag: AT3G02880
See related: Araport:AT3G02880
Gene type: protein coding
RefSeq status: REVIEWED
Organism: Arabidopsis thaliana (ecotype: Columbia)
Lineage: Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as: F13E7.17; F13E7_17
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Genomic context

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See in Genome Data Viewer

Location:: chromosome: 3

Exon count:: 3

Sequence:: Chromosome: 3; NC_003074.8 (634465..637284)

Chromosome 3 - NC_003074.8 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Go to reference sequence details

Genomic Sequence:: NC_003074.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Plasma Membrane-Associated Receptor-like Kinases Relocalize to Plasmodesmata in Response to Osmotic Stress.
Title: Plasma Membrane-Associated Receptor-like Kinases Relocalize to Plasmodesmata in Response to Osmotic Stress.
The TPK1 vacuolar K(+) channel is important for abscisic acid (ABA)- and CO2-mediated stomatal closure. During ABA- and CO2-mediated closure, TPK1 is phosphorylated and activated by the KIN7 receptor-like protein kinase (RLK), which co-expresses in the tonoplast and plasma membrane.
Title: KIN7 Kinase Regulates the Vacuolar TPK1 K(+) Channel during Stomatal Closure.

Submit: New GeneRIF Correction

Interactions

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Products	Interactant	Other Gene	Complex	Source	Pubs	Description

General gene information

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Homology

Orthologs from OrthoDB

NM_111157.5

Supported by ESTs:

Gene Ontology Provided by TAIR

Function	Evidence Code	Pubs
enables coreceptor activity	IPI Inferred from Physical Interaction more info	PubMed
enables kinase activity	ISS Inferred from Sequence or Structural Similarity more info
enables protein binding	IPI Inferred from Physical Interaction more info	PubMed
enables protein kinase activity	IEA Inferred from Electronic Annotation more info

Process	Evidence Code	Pubs
involved_in regulation of transmembrane transporter activity	IDA Inferred from Direct Assay more info	PubMed
acts_upstream_of_or_within regulation of water channel activity	IGI Inferred from Genetic Interaction more info	PubMed

Component	Evidence Code	Pubs
located_in cytosol	HDA more info	PubMed
NOT located_in cytosol	RCA inferred from Reviewed Computational Analysis more info	PubMed
located_in extracellular region	ISM Inferred from Sequence Model more info
located_in plant-type cell wall	HDA more info	PubMed
located_in plasma membrane	HDA more info	PubMed
located_in plasmodesma	HDA more info	PubMed

General protein information

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Preferred Names: Leucine-rich repeat protein kinase family protein

NP_186938.1

Leucine-rich repeat protein kinase family protein; FUNCTIONS IN: protein serine/threonine kinase activity, kinase activity, ATP binding; INVOLVED IN: transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation; LOCATED IN: anchored to plasma membrane, cell wall, plasma membrane, membrane, plant-type cell wall; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase domain (InterPro:IPR002290), Leucine-rich repeat-containing N-terminal domain, type 2 (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: Leucine-rich repeat protein kinase family protein (TAIR:AT5G16590.1); Has 140419 Blast hits to 103539 proteins in 3753 species: Archae - 105; Bacteria - 10616; Metazoa - 37369; Fungi - 7261; Plants - 69256; Viruses - 279; Other Eukaryotes - 15533 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

NC_003074.8 Reference assembly

Range

634465..637284

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

NM_111157.5 → NP_186938.1 Leucine-rich repeat protein kinase family protein [Arabidopsis thaliana]

See identical proteins and their annotated locations for NP_186938.1

Status: REVIEWED

UniProtKB/Swiss-Prot

Q9M8T0

UniProtKB/TrEMBL

A0A178VDB2, A0A384K9F3, C0LGM6

Conserved Domains (4) summary

PLN00113
Location:62 → 621

PLN00113; leucine-rich repeat receptor-like protein kinase; Provisional

sd00033
Location:92 → 115

LRR_RI; leucine-rich repeat [structural motif]

pfam08263
Location:26 → 63

LRRNT_2; Leucine rich repeat N-terminal domain

cl21453
Location:351 → 614

PKc_like; Protein Kinases, catalytic domain