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PAS_chr4_0490 Component of the CCR4-NOT transcriptional complex [ Komagataella phaffii GS115 ]

Gene ID: 8201436, updated on 23-Nov-2023

Summary

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Gene symbol
PAS_chr4_0490
Gene description
Component of the CCR4-NOT transcriptional complex
Locus tag
PAS_chr4_0490
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Komagataella phaffii GS115 (strain: GS115)
Lineage
Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Phaffomycetaceae; Komagataella
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Genomic context

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See PAS_chr4_0490 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
2
Sequence:
Chromosome: 4; NC_012966.1 (962805..965323)

Chromosome 4 - NC_012966.1Genomic Context describing neighboring genes Neighboring gene Mitochondrial phosphate carrier, imports inorganic phosphate into mitochondria Neighboring gene Hypothetical protein Neighboring gene DNA N-glycosylase and apurinic/apyrimidinic (AP) lyase involved in base excision repair Neighboring gene uncharacterized protein Neighboring gene Regulatory subunit A of the heterotrimeric protein phosphatase 2A

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_012966.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genome sequence of the recombinant protein production host Pichia pastoris. De Schutter K, et al. Nat Biotechnol, 2009 Jun. PMID 19465926
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables poly(A)-specific ribonuclease activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in nuclear-transcribed mRNA poly(A) tail shortening IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of CCR4-NOT complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
Component of the CCR4-NOT transcriptional complex

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_012966.1 Reference assembly

    Range
    962805..965323
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002493880.1 → XP_002493925.1  Component of the CCR4-NOT transcriptional complex [Komagataella phaffii GS115]

    See identical proteins and their annotated locations for XP_002493925.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    C4R821, F2QZ24
    Conserved Domains (4) summary
    cd09097
    Location:428 → 742
    Deadenylase_CCR4; C-terminal deadenylase domain of CCR4 and related domains
    sd00033
    Location:262 → 281
    LRR_RI; leucine-rich repeat [structural motif]
    pfam12799
    Location:282 → 320
    LRR_4; Leucine Rich repeats (2 copies)
    pfam13855
    Location:282 → 338
    LRR_8; Leucine rich repeat
Nucleotide Protein
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