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PAS_chr4_0667 Nucleolar protein, component of the small subunit (SSU) processome containing the U3 snoRNA [ Komagataella phaffii GS115 ]

Gene ID: 8201374, updated on 23-Nov-2023

Summary

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Gene symbol
PAS_chr4_0667
Gene description
Nucleolar protein, component of the small subunit (SSU) processome containing the U3 snoRNA
Locus tag
PAS_chr4_0667
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Komagataella phaffii GS115 (strain: GS115)
Lineage
Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Phaffomycetaceae; Komagataella
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Genomic context

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See PAS_chr4_0667 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
1
Sequence:
Chromosome: 4; NC_012966.1 (1289230..1291824)

Chromosome 4 - NC_012966.1Genomic Context describing neighboring genes Neighboring gene Gamma-glutamyl phosphate reductase, catalyzes the second step in proline biosynthesis Neighboring gene putative protein kinase, overexpression causes sensitivity to staurosporine Neighboring gene uncharacterized protein Neighboring gene Beta 5 subunit of the 20S proteasome, responsible for the chymotryptic activity of the proteasome

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_012966.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genome sequence of the recombinant protein production host Pichia pastoris. De Schutter K, et al. Nat Biotechnol, 2009 Jun. PMID 19465926
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in rRNA processing IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleolus IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of small-subunit processome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
Nucleolar protein, component of the small subunit (SSU) processome containing the U3 snoRNA

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_012966.1 Reference assembly

    Range
    1289230..1291824
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002494059.1 → XP_002494104.1  Nucleolar protein, component of the small subunit (SSU) processome containing the U3 snoRNA [Komagataella phaffii GS115]

    See identical proteins and their annotated locations for XP_002494104.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    C4R8K0, F2QYJ6
    Conserved Domains (1) summary
    pfam04615
    Location:178 → 860
    Utp14; Utp14 protein
Nucleotide Protein
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